NAAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG
CGCGGAATTCAAGCCCTTTCCAAGAACAGTACAGTCTCTAAATCACTGAG
CCATCTCTCCAGACCATTGCAGAGTCATTCTGTGTCATGTTTTGGATTTC
CTTCCAGCTCTTAAGACACGGAATATGAAGTCTCTCTTACACCCAGGCAA
CCAACACCAGAACAGTCATTTTGCAAGATTAAAAAAAAAAAAGTCTCACC
ATCTAAAGAAAGAGTAATCAGGTTTATTTACTTTAATCCTTGAGTTTTAA
AATAAATTGTTGCCTCTTAGTTTTGTTATCACTGAGAATCAGCACCTGGT
TGATTGGCAGTGAGTCCAGACCATAAACCATACTGATCTTTCTTTTCTTT
GTTTGTGTTTCTTTCTTTCTTTCTTCCTTTTTTTTTTTTTTTTTTTTTGG
GTAACGTTTCAAATCTTCCTCCTTTTAAAAATATACTAAGGAGAGGCTGG
AGAGATGGCTCAGAGGTTAAGATCACTGACTGTACTTCCAGATGTCCTGA
GTTCAATTCTCAAAAACCACATGGTGGCTCACAACCATCTGTAATGGGAG
CCAATGCCCTCTTCTGGTGTATCTGAAGACAGCTACCGTAAACTTAAAAA
GAAGAAAAAAGATTAAAAAAAGAAAAAAGGCGAAAATATACTAAGGAATA
TGTATATAATGCTTAA

GGCCGATGAAGTGGGAGGCCTGGCGGNCGCCTGTTTCCTACTGGGGGTGA
ACTATAGAAGTAACATTACCTGGTTTTAAGAATTCTGACCCACTCTACTA
CAGAAGGTTAGTGCATGTACCTGGCACACTCCTGTTACCTACTCAATTCA
ATTGTAATTCTGAGACGCTTCCCCCCCACCCCAGGAGATAATAAAACGGT
GGCTTTCCCCCCCACAGGTGGAACCATCTAGGGAGGCCTGCCACTGTTTT
CTGAGCTCCGGGTGAGGATGAAGACACTTTGACATGGCCAGCTTCAGACT
CGGGATCTGTCTTTGTTTTTTTCCGAAGGNACAAGCTCATTCCGNTTATT
TAAATATGAGTCAATTGTTTTCTGAAGCATGGGAATAAAAATATGTGTGC
TTTGAGATATACAATCCATTGAATAGATTTATTTCTGGTGCACATGTATA
GCGCTAAATGTCAATTCTAGGGCCACCTGATTGTTAGGCATATGGTTTAC
AACTGAGCTACAACCCCAGCCCCCATATTCGGTTTCTTTTTTTGTTTGTT
TGTTTTTTGTTTTTTCAAATTTGGTTTCTTAAGGTTAATAAAAATCACTG
TAAAATACAAATTTAAAGAAAGAGGGAGAAATTTGTATGTTATTTTTTGT
AGGGAACTTAAATATTGCTGACATTCTCATAGTAAGTGTCTTCATATCCA
CTTATGATGTN

Query= MSMg01no480_o14.b1 MSMg01no480_o14.b1 CHROMAT_FILE:
MSMg01no480_o14.b1 PHD_FILE: MSMg01no480_o14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:22 2005
         (659 letters)



>mm_chr13_28504161_28505218
          Length = 1058

 Score = 1017 bits (526), Expect = 0.0
 Identities = 600/630 (95%), Gaps = 16/630 (2%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattcaagccct-ttccaagaacagtacagtctctaaatcactgagccatctctccaga 61
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcaagccctatt-caagaacagtacagtctctaaatcactgagccatctctccaga 261

                                                                       
Query: 62  ccattgcagagtcattctgtgtcatgttttggatttccttccagctcttaagacacggaa 121
           ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || 
Sbjct: 262 ccattgcagagtcattctgtgtcatgttttggacttccttccagctcttaagacacagag 321

                                                                       
Query: 122 tatgaagtctctcttacacccaggcaaccaacaccagaacagtcattttgcaagattaaa 181
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 322 tatgaggtctctcttacacccaggcaaccaacaccagaacagtcattttgcaagatt-aa 380

                                                                       
Query: 182 aaaaaaaaagtctcaccatctaaagaaagagtaatcaggtttatttactttaatccttga 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaaaaaaagtctcaccatctaaagaaagagtaatcaggtttatttactttaatccttga 440

                                                                       
Query: 242 gttttaaaataaattgttgcctcttagttttgttatcactgagaatcagcacctggttga 301
           ||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||
Sbjct: 441 gttttaaaataaattgttgcctcttagtcctgttaccactgagaatcagcacctggttga 500

                                                                       
Query: 302 ttggcagtgagtccagaccataaaccatactgatctttcttttctttgtttg--tgtttc 359
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||
Sbjct: 501 ttggcagtgagtccagaccgtaaaccatactgatctttcttttctttgtttgtttgtttc 560

                                                                       
Query: 360 tttctttctttcttcc---tttttttttttttttttttttgggtaacgtttcaaatcttc 416
           ||||||||||||||||   ||||||||||||||||||||| | |||||||||||||||||
Sbjct: 561 tttctttctttcttcctttttttttttttttttttttttttgttaacgtttcaaatcttc 620

                                                                       
Query: 417 ctccttttaaaaatatactaaggagaggctggagagatggctcagaggttaagatcactg 476
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 621 ctccttttaaaaatatactaaggagaggctggagagatagctcagaggttaagatcactg 680

                                                                       
Query: 477 actgtacttccagatgtcctgagttcaattctcaaaaaccacatggtggctcacaaccat 536
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 681 actgtacttccagatgtcctgagttcaattctcaataaccacatggtggctcacaaccat 740

                                                                       
Query: 537 ctgtaatgggagccaatgccctcttctggtgtatctgaagacagctaccgtaaacttaaa 596
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||      
Sbjct: 741 ctgtaatgggagccaatgccctcttctggtgtatctgaagacagctacagtaaa------ 794

                                         
Query: 597 aagaagaaaaaagattaaaaaaagaaaaaa 626
           ||||||||||||||  ||||||| ||||||
Sbjct: 795 aagaagaaaaaagac-aaaaaaa-aaaaaa 822


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 86
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1058
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1048
Effective search space:   680152
Effective search space used:   680152
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)