Query= MSMg01no481_f24.b1 MSMg01no481_f24.b1 CHROMAT_FILE:
MSMg01no481_f24.b1 PHD_FILE: MSMg01no481_f24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:00 2005
(702 letters)
>mm_chr13_81405147_81406249
Length = 1103
Score = 1205 bits (623), Expect = 0.0
Identities = 688/731 (94%), Gaps = 35/731 (4%)
Strand = Plus / Minus
Query: 5 gaattctccttttc-ttacagctacagtctcagcttaagagcagacattagttcttattt 63
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 gaattctccttttcaatagagctacagtctcagcttaagagcagacattagttcttattt 722
Query: 64 gtattaaagtattgcaaacctggatcttcatgtcatagcatgctaccttgaagtctcttg 123
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 721 gtattaaagtattgcaaacctgaatcttcatgtcatagcatgctaccttgaagtctcttg 662
Query: 124 gtaggaactatggatgtgtgaaatgcatggtagttatcttctgaatggtgatggcttgac 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 gtaggaactatggatgtgtgaaatgcatggtagttatcttctgaatggtgatggcttgac 602
Query: 184 agttatgatctgctttcttgtgaggagatttttgtaattaaacctctaaggctttaatat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 agttatgatctgctttcttgtgaggagatttttgtaattaaacctctaaggctttaatat 542
Query: 244 gtaaacgctcctagttttctagtagcttgtcaagttgaaggtcatgttgatttcataaga 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gtaaacgctcctagttttctagtagcttgtcaagttgaaggtcatgttgatttcataaga 482
Query: 304 taccaaaggtctagtgtcatatcttcattagaatgttggaagacagcatgtgtgaaaccg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 taccaaaggtctagtgtcatatcttcattagaatgttggaagacagcatgtgtgaaaccg 422
Query: 364 tccactcctaagattattctttgcagggttgcttttaattagcattgtgttttctttaaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tccactcctaagattattctttgcagggttgcttttaattagcattgtgttttctttaaa 362
Query: 424 gtatctcactattcatagcctctttccagctttaagaatgtggtaagttgccatctctat 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gtatctcactattcatagcctctttccagctttaagaatgtggtaagttgccatctctat 302
Query: 484 gaaattttccatctcatttagccaagcacatgttaatgtttataagctccagtgatctct 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gaaattttccatctcatttagccaagcacatgttaatgtttataagctccagtgatctct 242
Query: 544 ccttttccattctttttattaatacttttatccccacctctgtctctctgtctctctctc 603
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 241 ccttttccattctttttattaatacttttattcccacctctgtctctctgtgtctctctc 182
Query: 604 tgtgtgtctctctctctctatttctttctctgtgtgtgtgtgtgt--------------- 648
| ||||||||| ||||||||| ||| ||||||||||||||||||
Sbjct: 181 tctgtgtctctgtctctctatctct--ctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 124
Query: 649 -----------------ctgtctgtctgtctgtctgtctgtctctccctgtcctgagcaa 691
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 tctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctctccctgtcctgagcaa 64
Query: 692 gctttatcagt 702
|||||||||||
Sbjct: 63 gctttatcagt 53
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 702
Length of database: 1103
Length adjustment: 10
Effective length of query: 692
Effective length of database: 1093
Effective search space: 756356
Effective search space used: 756356
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no481_f24.g1 MSMg01no481_f24.g1 CHROMAT_FILE:
MSMg01no481_f24.g1 PHD_FILE: MSMg01no481_f24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:00 2005
(382 letters)
>mm_chr13_81262170_81262951
Length = 782
Score = 716 bits (370), Expect = 0.0
Identities = 379/382 (99%)
Strand = Plus / Plus
Query: 1 aatgttgccaaccttattggagaatacatattttacaaacttacactcgggttgtaatta 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatgttgccaaacttattggagaatacatattttacaaacttacactcgggttgtaatta 260
Query: 61 tagggaaaataaaaccagggggatgttataggacaaaaatctcagtattttatgataaca 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagggaaaataaaaccagggagatgttataggacaaaaatctcagtattttatgataaca 320
Query: 121 ataatccttaaaatgtaagaaaacattttagatttctatgaagaaatgtctgtgtagtta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataatccttaaaatgtaagaaaacattttagatttctatgaagaaatgtctgtgtagtta 380
Query: 181 atgagaacaatgcattcatatatttatatatgatttcttaaaattatgattcagtggcta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgagaacaatgcattcatatatttatatatgatttcttaaaattatgattcagtggcta 440
Query: 241 tcagtttatatgatgtttttcagtgtcttaaggttttattgctatgatgagatactatga 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcagtttatatgatttttttcagtgtcttaaggttttattgctatgatgagatactatga 500
Query: 301 ccaaagcaactcttataaagaaaaacatttcattgaagctggctgatagtttcaaaggtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccaaagcaactcttataaagaaaaacatttcattgaagctggctgatagtttcaaaggtt 560
Query: 361 tagtcccttatcatcatgtggg 382
||||||||||||||||||||||
Sbjct: 561 tagtcccttatcatcatgtggg 582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 782
Length adjustment: 9
Effective length of query: 373
Effective length of database: 773
Effective search space: 288329
Effective search space used: 288329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
