BAC Information

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BAC

Clone NameMSMg01-482A12
Chromosome13 (Build37)
Map Location 99,474,782 - 99,475,025
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039740, Rgnef, LOC667703, Utp15, Ankra2, EG667718, Btf3, Foxd1, LOC100039827, LOC100039665, LOC100039854, LOC218501, Tmem174, Tmem171
Downstream geneLOC669675, Fcho2, Tnpo1, EG432798, LOC100039771, 1700024P04Rik, LOC100039967, LOC100039797, Zfp366, Ptcd2, Mrps27, Mtap1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482A12.T7 (MSMg01no482_a12.b1)MSMg01-482A12.TJ (MSMg01no482_a12.g1)
ACCAG562298AG562299
length664752
length of high quality
(start - end)
237 (51 - 287)---
definitionCHROMAT_FILE: MSMg01no482_a12.b1 PHD_FILE: MSMg01no482_a12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:51 2005CHROMAT_FILE: MSMg01no482_a12.g1 PHD_FILE: MSMg01no482_a12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AGCACGATCGNTACCGCAGGCGNGGAANNCTTCNGTGCTTTATCGGACGA
AACATGAAAGTCTTTATTAATCAAACTTGACAGTTTTCCGGGCCCTGTTT
TTTTTCCCCCATACAGATTATCTCTGTTCCTGTTTCCTGGTCTCCTATGA
TGTGTGTGTAATGGCTGGGGTCCCTTCAGCTGTGCTCCCCTCTCTCTGGT
ACCCAGTATTCTGTCCCGTATTTTTATTTTCCAGTTTACCCATGCTTCAT
TTGCCTGCTCAAATTTCATTCTCATGACTACACTTTTCAGTCCCTCGTTT
CTTCTAGGCTTCTTGTTTTGTGCCTATTTTGTTGTCTTGACTTTCTCTAC
ATCTTTCTTGAAGATGAAGGCCTGTGAGCACCTGCATCTAACATAGTGGC
CCTCAACCTCCTTGATGCTGCAGCCCGTCAGTACAAGTCCCCACGCAGTG
GTGGCCCCAACCATAAAAGTACTTCGTTGTTACTTCCTAACTGCGATTTG
GCTACTGTTCATACTGGATCATAATTCTGATTCTGCGTTTTCTGATGGTC
TCGGGTGACCCCTGGGTTACGTACCACTCTTTGGATGAACACTACGGATA
TACGAGATCCCGACGCTGATTTTTTTTCTCTAGCGAACCCCTGTTGCATT
CGCCTACCTTTCTG
ATTAACTATGATTTGTGAGGTCTGCGGGCCGCTGTTTTCCAAATATAGGT
GACCTATAGATAGTCCCCAGAATTCTTCTGGATTTCATTGCTCCCAACGC
TGACCTGGTATGCAGGTCTCCTGTCATGAGGTCATTCCTCTGGGATTGGC
TGAACTCTAAACCTTGCCTGGTGTTAGTTGTAGCATTTAATCACCACTAA
AAGGGAGAACACTGATTCCGTGCATTAATGATCTGAAAAAGATACTCGTT
CGCTCTGAAACTCGAGATAATTGTTAATGGGACCCAACACAAACTTTTAA
ACCATCCTGAAATGCTTTCAGATATTTGGTGCTGTGGATGACTTTTTGAT
GTGCCTGATTCTCGCCCGCGATCACTATGAAGAGAAACAAGATGCCATAG
TTCTGCAGTGGCAACAGACTCCACATCTCTGTGACTGAGGGAGAGACTAG
AACCATCACAGATGTTAACATACTGCTGCCTGACTCATAAAAAGCCTTAC
CAAGTCTCATGTAAAAATACAAAAATGCGCCCCGATGAGATGTGTTTGAG
AACCCGCCTCCACATAAAAGGATGCTGTAAGGGTGGTTGTTTCTCATACT
TGTTGAACAGTCTTAGATAGCCCTTGATTGCTTTTCCTTACTTGTTTTGT
TTCAAGCCCTGCACTCCTGGTACCTGTGCCGGGTTTCCGACCTCGGGTAT
TACACCCATTTTGGTCGAAGGGCTTTCACCACCAGACTCTGGAAAACAGT
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_a12.b1 MSMg01no482_a12.b1 CHROMAT_FILE:
MSMg01no482_a12.b1 PHD_FILE: MSMg01no482_a12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:51 2005
         (237 letters)



>mm_chr13_99474535_99475171
          Length = 637

 Score =  387 bits (200), Expect = e-112
 Identities = 230/244 (94%), Gaps = 7/244 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacatgaaagtctttattaatcaaacttgacagttttccgggccctg-------tttttt 53
           |||||||||||||||||||||||||||||||||||||||||||  ||       ||||||
Sbjct: 491 aacatgaaagtctttattaatcaaacttgacagttttccgggcattgttttttttttttt 432

                                                                       
Query: 54  ttcccccatacagattatctctgttcctgtttcctggtctcctatgatgtgtgtgtaatg 113
           || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tttccccatgcagattatctctgttcctgtttcctggtctcctatgatgtgtgtgtaatg 372

                                                                       
Query: 114 gctggggtcccttcagctgtgctcccctctctctggtacccagtattctgtcccgtattt 173
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | 
Sbjct: 371 gctggggtcccttcagctgtgctcccctctctctggtacccagtattctgtcccgtagtc 312

                                                                       
Query: 174 ttattttccagtttacccatgcttcatttgcctgctcaaatttcattctcatgactacac 233
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ctattttccagtttacccatgcttcatttgcctgctcaaatttcattctcatgactacac 252

               
Query: 234 tttt 237
           ||||
Sbjct: 251 tttt 248


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)