BAC Information

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BAC

Clone NameMSMg01-482B02
Chromosome13 (Build37)
Map Location 23,414,719 - 23,415,044
singlet/doubletsinglet
Overlap genenone
Upstream geneV1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541
Downstream geneZfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16, LOC100042017
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482B02.T7 (MSMg01no482_b02.b1)MSMg01-482B02.TJ (MSMg01no482_b02.g1)
ACCAG562326AG562327
length701656
length of high quality
(start - end)
195 (36 - 230)423 (42 - 464)
definitionCHROMAT_FILE: MSMg01no482_b02.b1 PHD_FILE: MSMg01no482_b02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:54 2005CHROMAT_FILE: MSMg01no482_b02.g1 PHD_FILE: MSMg01no482_b02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:54 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTGAT
TTTTCCAAAACTTTTATCATGAATGGGTGTTGGATCTTGTCAAATGCTTT
TTCTGCATCTAACGAGATGATCATGTGGTTTTTGTCTTTGAGTTTGTTTA
TATAATGGATTACATTGATGGATTTTCGTATATTAAACCATCCCTGCATC
CCTGGAATAAAACCTACTTGGTCAGGAATGGCATGAATTGCTNNTTTAAT
GGTGTTCTTGGATTCGGTTTAGCGAGAATTTTTTATTTGGGGGAATTTTT
GCTCCCCAATTTTCAAAAAAAATTTTTCTCAAAATTTTTCTTTTTNNNNT
TGGGGGAAAAATTTTTCTTGTGGGGGTCNTTTTTTTTATCTCTTCCCTGT
ACTACAGCCCGGCGTCCCGGCTTTGTTTTGTTCTATATGTATTCAGTCCA
CATATAACGTGACTGTTTTGACCCCCCCCTCAGTTCCCTCACTATTTATT
TTTCCCTTATATTTTTTATACTGCTCCTCTTATCTTACTTACTTTCATTC
TATCTCCTGCCTCCGTTGCACTTCTTTTCTCTCTTCCTTTCTCCTCTCTT
TGATTATAATCCTTCTATATCATTATTCCCCCTGCTTTTCTGCCCTCCCC
CTTTCCGGTCACCTTGTCTTCTTCTTACTTTCTTTTTGAGATATATTATT
T
TGTTTTTCAAATTGGGGTGAACTATAGAATGATCCCCGAAATTCTTTGGA
TTCTCCCTTATTTCTTACAAATAATATTCTTCATGTTCTATGTATTTCAA
AATAACACTTCCTTAGTCTATAACTATTGAGTTCCATATTTTTATAATCG
TTTTTCCTACAATAAGAGTTATACTCCAGTGAGGGCTGGTCCACTAGAAA
CATTAACATCCTCCCACGTCAGATGTGGCAGGAGTTTCTTGGAAAGTAAG
GCTTATCCGATGAAATGACTTTACTTTCTACACGTAGTCTTTGTTTAGCT
GTTTAATTGATGACAACTTCGTCCTTTATGACCATCTTCATTTGAAAAAG
CTTTCTTGTCTTCTTTTATTTTTTTATTTTTTTATTTTCTCAAAGATTTT
ATTTATTTATTATATGTAAGTACACTGGAGCTGTCTTCAGACACACCAGA
AGAGGGAGTCAGATCTCGTTACGGATGGTTGTGAGCCTCCCTGTGGTTGC
CCGCTATTTGAATCCTTTTCCCTTTGTATTATTACTTTTCTGTCCCCTTT
ATTAGAAGGCTTTGTCTCCTATTATTTCGCCCTCTTTATAATTATTTGTT
CCTTACCCTGTAATCTCACTCCGTTTTCCACTTCGCATTTTCTCTTCACC
TAATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_b02.g1 MSMg01no482_b02.g1 CHROMAT_FILE:
MSMg01no482_b02.g1 PHD_FILE: MSMg01no482_b02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:54 2005
         (423 letters)



>mm_chr13_23414519_23415340
          Length = 822

 Score =  617 bits (319), Expect = 0.0
 Identities = 325/327 (99%), Gaps = 1/327 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctttggattctcccttatttcttacaaataatattcttcatgttctatgtatttcaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 ttctttggattctcccttatttcttacaaataatattcttcatgttcaatgtatttcaaa 260

                                                                       
Query: 61  ataacacttccttagtctataactattgagttccatatttttataatcgtttttcctaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataacacttccttagtctataactattgagttccatatttttataatcgtttttcctaca 320

                                                                       
Query: 121 ataagagttatactccagtgagggctggtccactagaaacattaacatcctcccacgtca 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 ataagagttatactccagtgagggctggtccactagaaacattaacatcctcccac-tca 379

                                                                       
Query: 181 gatgtggcaggagtttcttggaaagtaaggcttatccgatgaaatgactttactttctac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gatgtggcaggagtttcttggaaagtaaggcttatccgatgaaatgactttactttctac 439

                                                                       
Query: 241 acgtagtctttgtttagctgtttaattgatgacaacttcgtcctttatgaccatcttcat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 acgtagtctttgtttagctgtttaattgatgacaacttcgtcctttatgaccatcttcat 499

                                      
Query: 301 ttgaaaaagctttcttgtcttctttta 327
           |||||||||||||||||||||||||||
Sbjct: 500 ttgaaaaagctttcttgtcttctttta 526


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 822
Length adjustment: 9
Effective length of query: 414
Effective length of database: 813
Effective search space:   336582
Effective search space used:   336582
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)