Query= MSMg01no482_b14.b1 MSMg01no482_b14.b1 CHROMAT_FILE:
MSMg01no482_b14.b1 PHD_FILE: MSMg01no482_b14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:56 2005
(603 letters)
>mm_chr13_88561767_88562772
Length = 1006
Score = 808 bits (418), Expect = 0.0
Identities = 463/488 (94%), Gaps = 20/488 (4%)
Strand = Plus / Minus
Query: 135 aaggacttgtacatatttcttagaaaatatttactttctatagatattctttcaaaataa 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1006 aaggacttgtacatatttcttagaaaatatttactttctatagatattctttcaaaataa 947
Query: 195 aatatttttactttctgaaatgttaaatatttaactctaaatatctgaattgttaatata 254
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 946 aatatttttactttctgaaatcttaaatatttaactctaaatatctgaattgttaatata 887
Query: 255 ctatctcattcctgacattgttttttggttttgctttttg---------------ttttt 299
|||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 886 ctatctcattcctgacattgttttttggttttgctttttgttttttgttttttgtttttt 827
Query: 300 ttttttttgtttctttttgtattgaaacatcaaaatcttggattaaatcatactcttagt 359
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 826 ttttttttgtttctttttgtattgaaacatcaaaatcttgggttaaatcatactcttagt 767
Query: 360 gtttgattaca-ttttttaatgatgattttaaagttgattttgtgttttgcatctattta 418
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 gtttgattacatttttttaatgatgattttaaagttgattttgtgttttgcatctattta 707
Query: 419 aaaggaatactgttctaaaatttctttcactattaaactaaacccactttcacctgtccc 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 aaaggaatactgttctaaaatttctttcactattaaactaaacccactttcacctgtccc 647
Query: 479 cataaagttactatctttctcagtttcctcctcaaatcatctacatagcacca-ttcctc 537
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||
Sbjct: 646 cataaagttactatctttctcagtttcctcctcaaatcatctacatagcagcacttc-tc 588
Query: 538 tctcattcctttgtatttttcaggtttctgaaataacccaagtta--gattcttattaga 595
|||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct: 587 tctcattcctttctattttccaggtttctgaaataacccaagttatggattcttattaga 528
Query: 596 agctatca 603
||||||||
Sbjct: 527 agctatca 520
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1006
Length adjustment: 10
Effective length of query: 593
Effective length of database: 996
Effective search space: 590628
Effective search space used: 590628
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no482_b14.g1 MSMg01no482_b14.g1 CHROMAT_FILE:
MSMg01no482_b14.g1 PHD_FILE: MSMg01no482_b14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:56 2005
(674 letters)
>mm_chr13_88408960_88410034
Length = 1075
Score = 1228 bits (635), Expect = 0.0
Identities = 665/675 (98%), Gaps = 1/675 (0%)
Strand = Plus / Plus
Query: 1 tttttcgattgtttgttttgtttttgttttgtttttcgagatgaggtttctctgtatagc 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttttcgtttgtttgttttgtttttgttttgtttttcgagatgaggtttctctgtatagc 260
Query: 61 cctggctgtcctggaactcactttgtagaccaggctggcctcgagctcagaaatccacct 120
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 261 cctggctgtcctggaactcactttgtagaccaggctggcttcgaactcagaaatccacct 320
Query: 121 gcctctgcctcccgagtgctgggattaaaggcatgtgccaacacgcccagctcaagaatt 180
||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||
Sbjct: 321 gcctctgcctcccgagtgctgggattaaaggcatgcgccaccacgcccggctcaagaatt 380
Query: 181 ctttataattcttaattttggttaattataccactggtgactcctgtacattattatctc 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 ctttataattcttaattttggttaattataccactgctgactcctgtacattattatctc 440
Query: 241 ttcccccacataattacttaatctctggtatatgatgttttcaatatatgaacttataga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcccccacataattacttaatctctggtatatgatgttttcaatatatgaacttataga 500
Query: 301 tattataatcacataaactagtataattcataatatgtataatgtttgtgtaagaattta 360
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 501 tattataatcacataaactagtataattcataatatgtgtaatgtttgtgtaagaattta 560
Query: 361 ttttaataaagtattcaaataaatagtatttattaaatttttaatttatagttttaacaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttttaataaagtattcaaataaatagtatttattaaatttttaatttatagttttaacaa 620
Query: 421 aatatgtttaaaataaagaaatgaaacattataaaaatagacccctc-aatgatgttaca 479
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 621 aatatgtttaaaataaagaaatgaaacattataaaaatagacccctccaatgatgttaca 680
Query: 480 tcaatttctattttcataagaatattaaactatcccaacacaccacttaggcaaaagccc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcaatttctattttcataagaatattaaactatcccaacacaccacttaggcaaaagccc 740
Query: 540 ctgttcacctagaaaccccagggaaggccattccaactcccagtcaacatacttaagagt 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctgttcacctagaaaccccagggaaggccattccaactcccagtcaacatacttaagagt 800
Query: 600 gaactaacctccaagtgtactctttgccctcagatccatttcctatcccttaaatccagc 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gaactaacctccaagtgtactctttgccctcagatccatttcctatcccttaaatccagc 860
Query: 660 agatggaccctgatt 674
|||| ||||||||||
Sbjct: 861 agatagaccctgatt 875
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1075
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1065
Effective search space: 707160
Effective search space used: 707160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
