BAC Information

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BAC

Clone NameMSMg01-483M16
Chromosome13 (Build37)
Map Location 23,323,008 - 23,323,594
singlet/doubletsinglet
Overlap genenone
Upstream geneOTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12
Downstream geneV1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-483M16.T7 (MSMg01no483_m16.b1)MSMg01-483M16.TJ (MSMg01no483_m16.g1)
ACCAG563635AG563636
length780777
length of high quality
(start - end)		607 (50 - 656)593 (79 - 671)
definitionCHROMAT_FILE: MSMg01no483_m16.b1 PHD_FILE: MSMg01no483_m16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:08 2005CHROMAT_FILE: MSMg01no483_m16.g1 PHD_FILE: MSMg01no483_m16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:08 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NNNCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTCATTTCCTGAATGTAGACTCAGGTCCTTTTGCAGCTCTC
TGGTGATACAGAGCTGGATGGCTCTGTGGAGAGCACCCGGGCATTAACAA
AGGGCAGCTGCAGGACAAGCCTTGGTCTGCTTCAGTCACACTCGTTGACT
GACCTTGGAAAAAGAAAACCTAGAAAGCTCAGACACATTAACTGAAACAT
TACTGTGTGCTTGATGTTCACTTTCTGCTGTATCTCCAGTCTATTCCTGC
AGAGAACACTCGTGAATATAACACCATTGAAATGTTTCTGGGTATTTAGG
TTCTGTGACTGGTGCATTGGGCTTCTGCTGACTAACTACATACTACACAT
CATTCTTTCATAATTCTAAGAAGTCCTTTCCATGGATGGATTCTTACAGA
CACTTTGAATAATCACAAAGTATCCTCGGAGTGCTATCATTTTGCAAGGA
CAAATAAGCAATTCTTGGAATACCATGATCAAACCACTATGAATTTTTCT
AAAAATTTACCAAATCCATTTGCATGCTTCCAGTCATGGTATTAATAAAA
CCAGTTTTATGAATTGTAATTAAAGCTTATTTCTCAGGGCTAGATTGATA
CCTCAGTCATTAAGATCACTGGCCGGCTTTTAGAGGTCCAAGATTCAATT
TCTAGGAACCATATTTTAGCTCAGAAACATCTATCTAACTCCAGTCAGTA
ACAGAGAAATTGATGCTCTATTCCATCACN

NCCGAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACACTGGTGAGAAGCCATATAC
TTGTACCGAGTGTGGGAAATCCTTCAGCCAGAGAGGTCACTTTATGGAGC
ACCAGAAAATTCATACAGGAGAAAAACCTTTCAAGTGTGAGGAGTGTGAG
AAAACCTTCACCAGGAGCACACACCTCACTCAACATCAGAAAATTCACAC
TGGGGAGAAAACTTACAAGTGTAATGAATGTGGGAAGGCCTTCAATGGCC
CATCAACGTTTATCCGTCACCATATGATTCATACTGGAGAAAAGCCTTAT
GAGTGTAATGAATGTGGCAAAGCCTTCAGCCAGCACTCCAACCTGACTCA
GCATCAGAAAACACACACTGGGGAGAAACCCTATGACTGTGCAGAATGTG
GGAAAGCCTTTAGTTACTGGTCATCCCTAGCTCAGCACCTGAAAATTCAT
ACAGGAGAGAAGCCCTACAAGTGTAGCGACTGCGGGAAGGCCTTCAGTTA
CTGCTCCTCCCTTACTCAGCATCGGAGGATTCACACCCGAGAGAAGCCCT
TTGAGTGCAGTGAGTGTGGAAAGGCTTTCAGCTATCTGTCAAACCTTAAT
CAGCATCAGAAAACTCACACCCAGGAGAAAGCCTATGAATGTAAGGAATG
TGGGAAAGCCTTTATTCGGAGTTCATCTCTTGCNTAGCATGAAAGAATCA
TACTGGAGAGAAGCCTTTATCATGTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no483_m16.b1 MSMg01no483_m16.b1 CHROMAT_FILE:
MSMg01no483_m16.b1 PHD_FILE: MSMg01no483_m16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:08 2005
         (607 letters)



>mm_chr13_23322789_23323794
          Length = 1006

 Score = 1075 bits (556), Expect = 0.0
 Identities = 580/588 (98%), Gaps = 1/588 (0%)
 Strand = Plus / Plus

                                                                       
Query: 20  tgaatgtagactcaggtccttttgcagctctctggtgatacagagctggatggctctgtg 79
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 tgaatgtagactcaggtccttttgcagctctctggtgatacagagctggatggctctgtg 279

                                                                       
Query: 80  gagagcacccgggcattaacaaagggcagctgcaggacaagccttggtctgcttcagtca 139
           ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 280 gagagcacccgggcattaacaaagggcagctgcaa-acaagccttggtctgcttcagtca 338

                                                                       
Query: 140 cactcgttgactgaccttggaaaaagaaaacctagaaagctcagacacattaactgaaac 199
           |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 339 cactcgttgactgaccttggaaaaagaaaacctagaaacctcagacatattaactgaaac 398

                                                                       
Query: 200 attactgtgtgcttgatgttcactttctgctgtatctccagtctattcctgcagagaaca 259
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 399 attactgtgtgcttgatgttcactttctgctgtatctccagtctattcccgcagagagca 458

                                                                       
Query: 260 ctcgtgaatataacaccattgaaatgtttctgggtatttaggttctgtgactggtgcatt 319
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 459 ctcgtgaatataacaccattgaaatgtttctgggtgtttaggttctgtgactggtgcatt 518

                                                                       
Query: 320 gggcttctgctgactaactacatactacacatcattctttcataattctaagaagtcctt 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gggcttctgctgactaactacatactacacatcattctttcataattctaagaagtcctt 578

                                                                       
Query: 380 tccatggatggattcttacagacactttgaataatcacaaagtatcctcggagtgctatc 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 tccatggatggattcttacagacactttgaataatcacaaagtatcctcggagtgctatc 638

                                                                       
Query: 440 attttgcaaggacaaataagcaattcttggaataccatgatcaaaccactatgaattttt 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 attttgcaaggacaaataagcaattcttggaataccatgatcaaaccactatgaattttt 698

                                                                       
Query: 500 ctaaaaatttaccaaatccatttgcatgcttccagtcatggtattaataaaaccagtttt 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 ctaaaaatttaccaaatccatttgcatgcttccagtcatggtattaataaaaccagtttt 758

                                                           
Query: 560 atgaattgtaattaaagcttatttctcagggctagattgatacctcag 607
           ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 759 atgaattgtaattaaagtttatttctcagggctagattgatacctcag 806


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1006
Length adjustment: 10
Effective length of query: 597
Effective length of database: 996
Effective search space:   594612
Effective search space used:   594612
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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