BAC Information

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BAC

Clone NameMSMg01-483M21
Chromosome13 (Build37)
Map Location 69,285,978 - 69,454,072
singlet/doubletdoublet
Overlap genenone
Upstream geneAA414992, LOC666238, EG666245, EG666272, LOC100042223, Mtrr, LOC100042233, Fastkd3, 1700001L19Rik, Adcy2, LOC666205
Downstream geneLOC218332, Pols, A530095I07Rik, Srd5a1, Nsun2, LOC100042260, 3110006E14Rik, 4930547H16Rik, Med10, EG620143, LOC100042291, 4930520P13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-483M21.T7 (MSMg01no483_m21.b1)MSMg01-483M21.TJ (MSMg01no483_m21.g1)
ACCAG563645AG563646
length754765
length of high quality
(start - end)		564 (79 - 642)549 (81 - 629)
definitionCHROMAT_FILE: MSMg01no483_m21.b1 PHD_FILE: MSMg01no483_m21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:09 2005CHROMAT_FILE: MSMg01no483_m21.g1 PHD_FILE: MSMg01no483_m21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,285,978 - 69,286,541)(69,453,524 - 69,454,072)
sequence
NNNNNNTTTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAGAGG
ATCCGCGGAATTCAAGGCTACTCTTAATAAAGCCCAATACTCATACCTTT
TGTGAATGTTTTTCAGGTTCAAAGCCTCTAATTATTCTTAAACCTCTGTT
TGCCAGCTTTTTGCTTCAATGACAGGAGCCCTCTGCTTCCATTACACTAA
CCCCTGCCTACTGTATATAGTTTCTTTCCAATTGATTAATATGTACAGAA
GCCAATATGCCTTAAAGTTTCCTTCAGGGATTTTCAGAGTGATGTTGGTA
AGTACTACCATGTCCACCATCAATTTTTGCATGCATGTGTATTTTATGCA
TTCTCTTTAGCTGTCCTTGGATCATAATGTGATATTCCCAAGTGAGCTAC
AGTAACACCATTGATGTGTTTCCTGCTTCTGCAATAGTTTATCTTCTACA
ACAAAGCAATTGTTTTTATCCCTTAGTGTTTTCTGGAAATGGTCTCAAAG
GCTATTACATGGAAGGATAAATGAAGGAAGGATGTAACCTGAAAACCAGG
AACTCTGTATTTCTTAGTCCACCTTAAAAATACCAAATATGTGACTATAA
ATTCAGAGAAAACCCAATTTTCACCTCATTTTCTAGTCTTGCCTTCACAG
ATATTTAAGTTATCAAGGCTGAGTCAGCTCAAGGTGCTTTGTTATTTTGA
AGGTTATAGAATTGTCAACATGAATTCACCCACAACTAAGCTTCTTCTTT
TAAT

NNNNNTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACAGCACACTGAGTTTGCC
ACTTTCCTTGATGAGCTCTTGGACATGGATGACCTGTTCCTCATCCATGC
AGCTCAGAAAGAAGCAGAACGTGCTCATGTGAAGCAGTGGCTTTCCGTTC
TTTTGTTTGAAATCCCACATCATGTGAAAGTCCCAGACATGTTATGCATT
TGTCACTGAGTACAGCTAGATGAGGTTTACCCTTCTTTCCCTCCACATAT
ACTTCAGGCACTGACTGTAACCCGGAAGCTGTTCTAGGTGCTGAATGTGG
GAGATGGTGAGGGAGGTGAGCAATGCATAGCCAGAGCTGGGTTAAACATA
AACCATAAGAGGTTAGCTATTGGAGTATAAAGATGTGAAGAATATACCCA
ATATGGGATGTTAGAGATTTAGATGCTGTTTGAGGACTCACTGAATAAAG
TATACAGAAGGCTTTGCTTTATAGTTGAGGTCCCAGAGACACAGAAGAAA
CAGAAAAGAACATGAGAAACACACAAAGGTCCTGGGGTAGAAAAGGGCTT
ATTTCAGTAATAGAAAGGATCAAGGGACATTAGAAGGGAATTCAGTAGAG
TCAGCTGGAGAGTCTGGAAGATGTCTAGGTCCCACAGAAGCAAATACTTC
TGTTTTGGATTTTCCCTATTCCCCATTTTGAAAATATTGTCTTCGAAATC
TTTGCTCCTCTCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no483_m21.b1 MSMg01no483_m21.b1 CHROMAT_FILE:
MSMg01no483_m21.b1 PHD_FILE: MSMg01no483_m21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:09 2005
         (564 letters)



>mm_chr13_69285778_69286741
          Length = 964

 Score = 1060 bits (548), Expect = 0.0
 Identities = 560/564 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagcccaatactcataccttttgtgaatgtttttcaggttcaaagcctctaattattct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagcccaatactcataccttttgtgaatgtttttcaggttcaaagcctctaattattct 260

                                                                       
Query: 61  taaacctctgtttgccagctttttgcttcaatgacaggagccctctgcttccattacact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaacctctgtttgccagctttttgcttcaatgacaggagccctctgcttccattacact 320

                                                                       
Query: 121 aacccctgcctactgtatatagtttctttccaattgattaatatgtacagaagccaatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacccctgcctactgtatatagtttctttccaattgattaatatgtacagaagccaatat 380

                                                                       
Query: 181 gccttaaagtttccttcagggattttcagagtgatgttggtaagtactaccatgtccacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gccttaaagtttccttcagggattttcagagtgatgttggtaagtactaccatgtccacc 440

                                                                       
Query: 241 atcaatttttgcatgcatgtgtattttatgcattctctttagctgtccttggatcataat 300
           ||||| |   ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcaagtcaagcatgcatgtgtattttatgcattctctttagctgtccttggatcataat 500

                                                                       
Query: 301 gtgatattcccaagtgagctacagtaacaccattgatgtgtttcctgcttctgcaatagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgatattcccaagtgagctacagtaacaccattgatgtgtttcctgcttctgcaatagt 560

                                                                       
Query: 361 ttatcttctacaacaaagcaattgtttttatcccttagtgttttctggaaatggtctcaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttatcttctacaacaaagcaattgtttttatcccttagtgttttctggaaatggtctcaa 620

                                                                       
Query: 421 aggctattacatggaaggataaatgaaggaaggatgtaacctgaaaaccaggaactctgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aggctattacatggaaggataaatgaaggaaggatgtaacctgaaaaccaggaactctgt 680

                                                                       
Query: 481 atttcttagtccaccttaaaaataccaaatatgtgactataaattcagagaaaacccaat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atttcttagtccaccttaaaaataccaaatatgtgactataaattcagagaaaacccaat 740

                                   
Query: 541 tttcacctcattttctagtcttgc 564
           ||||||||||||||||||||||||
Sbjct: 741 tttcacctcattttctagtcttgc 764


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space:   528516
Effective search space used:   528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no483_m21.g1 MSMg01no483_m21.g1 CHROMAT_FILE:
MSMg01no483_m21.g1 PHD_FILE: MSMg01no483_m21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:09 2005
         (549 letters)



>mm_chr13_69453324_69454272
          Length = 949

 Score = 1062 bits (549), Expect = 0.0
 Identities = 549/549 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacagcacactgagtttgccactttccttgatgagctcttggacatggatgacctgttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 cacagcacactgagtttgccactttccttgatgagctcttggacatggatgacctgttcc 690

                                                                       
Query: 61  tcatccatgcagctcagaaagaagcagaacgtgctcatgtgaagcagtggctttccgttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 tcatccatgcagctcagaaagaagcagaacgtgctcatgtgaagcagtggctttccgttc 630

                                                                       
Query: 121 ttttgtttgaaatcccacatcatgtgaaagtcccagacatgttatgcatttgtcactgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 ttttgtttgaaatcccacatcatgtgaaagtcccagacatgttatgcatttgtcactgag 570

                                                                       
Query: 181 tacagctagatgaggtttacccttctttccctccacatatacttcaggcactgactgtaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tacagctagatgaggtttacccttctttccctccacatatacttcaggcactgactgtaa 510

                                                                       
Query: 241 cccggaagctgttctaggtgctgaatgtgggagatggtgagggaggtgagcaatgcatag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 cccggaagctgttctaggtgctgaatgtgggagatggtgagggaggtgagcaatgcatag 450

                                                                       
Query: 301 ccagagctgggttaaacataaaccataagaggttagctattggagtataaagatgtgaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ccagagctgggttaaacataaaccataagaggttagctattggagtataaagatgtgaag 390

                                                                       
Query: 361 aatatacccaatatgggatgttagagatttagatgctgtttgaggactcactgaataaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 aatatacccaatatgggatgttagagatttagatgctgtttgaggactcactgaataaag 330

                                                                       
Query: 421 tatacagaaggctttgctttatagttgaggtcccagagacacagaagaaacagaaaagaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tatacagaaggctttgctttatagttgaggtcccagagacacagaagaaacagaaaagaa 270

                                                                       
Query: 481 catgagaaacacacaaaggtcctggggtagaaaagggcttatttcagtaatagaaaggat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 catgagaaacacacaaaggtcctggggtagaaaagggcttatttcagtaatagaaaggat 210

                    
Query: 541 caagggaca 549
           |||||||||
Sbjct: 209 caagggaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space:   506121
Effective search space used:   506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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