BAC Information

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BAC

Clone NameMSMg01-484E20
Chromosome13 (Build37)
Map Location 74,910,795 - 74,911,404
singlet/doubletsinglet
Overlap geneCast
Upstream geneSlc12a7, Nkd2, EG666360, Trip13, Brd9, Zdhhc11, LOC100042909, 2900041A09Rik, LOC621824, Cep72, Slc9a3, Exoc3, Ahrr, Pdcd6, Sdha, Ccdc127, AI595366, Zfp72, LOC666670, LOC634386, LOC100042547, LOC666683, LOC547136, BC012278, LOC434490, Arts1, LOC622204
Downstream geneEG544954, Pcsk1, LOC672443, LOC666764, LOC100042606, LOC100042986, Ell2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-484E20.T7 (MSMg01no484_e20.b1)MSMg01-484E20.TJ (MSMg01no484_e20.g1)
ACCAG564023AG564024
length780765
length of high quality
(start - end)
630 (46 - 675)586 (73 - 658)
definitionCHROMAT_FILE: MSMg01no484_e20.b1 PHD_FILE: MSMg01no484_e20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:49 2005CHROMAT_FILE: MSMg01no484_e20.g1 PHD_FILE: MSMg01no484_e20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTACATTTTCAAAACTGATGACAAAGTATGCATCACAACCATTCT
CATACTGACTTTAATCAGAGTTTATAAAATGTCTGCAACTTTATTGGTGC
CCATTATTAATTATTAAAAACTGAAATTTAAGTACGCAACAATTTGTAGT
AACTGTTTTGAATTAGATATATCTAAATTACATAAGAGTTTTGGATCCTT
TAAGACTAACTACATAGCAGACAGAATATTGCTTATGAACATAATCACTC
ACTTTGTTAGGACAAATTCAGTTTTGGAGTAAGCAAAAACATTTTATAAA
CACGTATTTGGCAAAAAATCTAATACATATTTGTTTCTGAATGCAGACTT
TATAGTTTTATCAATAATTATGCAATTAGCAGTTATTCTAACTGCCAGGT
TGAAAGTATCCAGAAACAAGCAAACTTGGATTAAACTTCATAGCCCGCTG
TATCTACCATTTGATCATAACTTCTCTGTTTCAGGATAATATTTGCTTTC
TTATTTGCATTATGGCAATTGTGTAGTAAAAGACTTCACTTATCACATGC
CGAAACCTCCAGCTTTTCTCATGGAGGCGAGAGATGATATTATTGATGCT
ATAGCCCTTTCAATAAGGTATCAAAAGAAAGAAGCAATTGTCTATGTGGC
AGTTTGAATGATAAATTANGTTTTGGAGGAAGTATGTCACTGATGACAGG
CTTTGAAAATTTAAAGCCTCAAACACGTTC
GATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTATTAAGTATTTTGCATCAATATTCATA
AGGGAAATTGGTCAGAAGTTCTCTTTCTCTGTTGGGTCTCTGTGTAGTTT
AGGTATCACAGCAAGTGTGGCTTCATAGAGTGAGTTGGGTAGAGTACCTT
TCTGTTTCTATTTTGTGGAATAGTTTGAGGAGTATTGGAATTAGGACTTC
TTCGAAGGTCTGATAGAACTCTGCACTAAATCCATCTGGTCCTGGGCTTT
GCTTTTTTTTTTTTTTTTTTCTGGTTTGGAGTGTTTCTATTTCTTTAGAT
GATATAGTTAAGATTGTCAATCTGATCCTGATTTAAATTTGGTACCTGGT
ATCTGTTTAGAAAATTGTCCATTTCAACCAGGTTTTCCAGTTTTGTGGAG
TATAGGCATTTGTAGTCGGATCTGATGATTTTTTGGGATTTCCTCAGATT
CAGTTGTTATATCTCCCTTTTCATTTCTGATTTTGTTAATTAGGATACTG
TCTCTGTGCCCTCTAGTTAGTATGGCTATGGGTTTATCTATCTTATTGAT
TTTCTCAAAGAACCAGTTCTTGGTTTGGTTGATTCTTTGTCTAGTTCTTT
TTGTTTCCACTTGGTTGATTTCAGCCCTGAGTTTGATTATTTCCTGCAGT
CGACTCCTCTTTGGTGAATTTGCTTCCTTTTGTTCTAGAGCTTTCAAATG
TGTTGTCAAGCTACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no484_e20.b1 MSMg01no484_e20.b1 CHROMAT_FILE:
MSMg01no484_e20.b1 PHD_FILE: MSMg01no484_e20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:49 2005
         (630 letters)



>mm_chr13_74910575_74911604
          Length = 1030

 Score = 1149 bits (594), Expect = 0.0
 Identities = 606/610 (99%)
 Strand = Plus / Plus

                                                                       
Query: 21  aaaactgatgacaaagtatgcatcacaaccattctcatactgactttaatcagagtttat 80
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 aaaactgatgacaaagtatgcatcacaaccattctcatactgactttaatcagagtttat 280

                                                                       
Query: 81  aaaatgtctgcaactttattggtgcccattattaattattaaaaactgaaatttaagtac 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 281 aaaatgtctgcaactttattggtgcccattattaattattaaaaactgaaatttaagtat 340

                                                                       
Query: 141 gcaacaatttgtagtaactgttttgaattagatatatctaaattacataagagttttgga 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 gcaacaatttgtagtaactgttttgaattagatatatctaaattacataagagttttgga 400

                                                                       
Query: 201 tcctttaagactaactacatagcagacagaatattgcttatgaacataatcactcacttt 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tcctttaagactaactacatagcagacagaatattgcttatgaacataatcactcacttt 460

                                                                       
Query: 261 gttaggacaaattcagttttggagtaagcaaaaacattttataaacacgtatttggcaaa 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 gttaggacaaattcagttttggagtaagcaaaaacattttataaacacgtatttggcaaa 520

                                                                       
Query: 321 aaatctaatacatatttgtttctgaatgcagactttatagttttatcaataattatgcaa 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 aaatctaatacatatttgtttctgaatgcagactttatagttttatcaataattatgcaa 580

                                                                       
Query: 381 ttagcagttattctaactgccaggttgaaagtatccagaaacaagcaaacttggattaaa 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 ttagcagttattctaactgccaggttgaaagtatccagaaacaagcaaacttggattaaa 640

                                                                       
Query: 441 cttcatagcccgctgtatctaccatttgatcataacttctctgtttcaggataatatttg 500
           |||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||
Sbjct: 641 cttcatagcccgctgtatttatcatttgatcataacttctctgtctcaggataatatttg 700

                                                                       
Query: 501 ctttcttatttgcattatggcaattgtgtagtaaaagacttcacttatcacatgccgaaa 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 ctttcttatttgcattatggcaattgtgtagtaaaagacttcacttatcacatgccgaaa 760

                                                                       
Query: 561 cctccagcttttctcatggaggcgagagatgatattattgatgctatagccctttcaata 620
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 cctccagcttttctcatggaggcgagagatgatattattgatgctatagccctttcaata 820

                     
Query: 621 aggtatcaaa 630
           ||||||||||
Sbjct: 821 aggtatcaaa 830


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space:   632400
Effective search space used:   632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)