Query= MSMg01no486_l15.b1 MSMg01no486_l15.b1 CHROMAT_FILE:
MSMg01no486_l15.b1 PHD_FILE: MSMg01no486_l15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:06 2005
(624 letters)
>mm_chr13_47938939_47939963
Length = 1025
Score = 1185 bits (613), Expect = 0.0
Identities = 622/625 (99%), Gaps = 1/625 (0%)
Strand = Plus / Plus
Query: 1 ggaattcgtttttgta-cccagcatttcagaaccccaagggctttctgatctgttagcct 59
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggaattcgtttttgaaacccagcatttcagaaccccaagggctttctgatctgttagcct 260
Query: 60 tagcggtttagaggattaaaaaggcaagaatattaggaagcagaaagaaaagcaagcagg 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagcggtttagaggattaaaaaggcaagaatattaggaagcagaaagaaaagcaagcagg 320
Query: 120 cagcacagccaatggagcagatctaatggagcacggggccagggaagaaaggattctgcc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagcacagccaatggagcagatctaatggagcacggggccagggaagaaaggattctgcc 380
Query: 180 acctgagcgatcgtatttattattcttgtttcacaattaaacttttaagaagcgaataat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acctgagcgatcgtatttattattcttgtttcacaattaaacttttaagaagcgaataat 440
Query: 240 aattttccagacattttccctttctttgctatgccagtcacatcgccccgtcctttatca 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aattttccagacattttccctttctttgctatgccagtcacatcgccccgtcctttatca 500
Query: 300 acactgctctgcatctgaatgggctgtaattgaactgtcgctttcctgaaggtcagtagc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acactgctctgcatctgaatgggctgtaattgaactgtcgctttcctgaaggtcagtagc 560
Query: 360 ctttcattaggaacaatgtgtctttcctgataaattataaagtctctgaggattcgaaag 419
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctttcattaggaagaatgtgtctttcctgataaattataaagtctctgaggattcgaaag 620
Query: 420 catatttaaaaaattctccttaccataccttgaaaaaccaaaagcacagatatttatttt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catatttaaaaaattctccttaccataccttgaaaaaccaaaagcacagatatttatttt 680
Query: 480 tctgttctctctcggtggggtaggggagtggacagaaaggtcttctgcgtctcttatttc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tctgttctctctcggtggggtaggggagtggacagaaaggtcttctgcgtctcttatttc 740
Query: 540 ctttggtgggggattagttatttggggggcaatttcaatgtctcatttatttttgtgggg 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctttggtgggggattagttatttggggggcaatttcaatgtctcatttatttttgtgggg 800
Query: 600 gtccatgtgacacaggtcagaggac 624
|||||||||||||||||||||||||
Sbjct: 801 gtccatgtgacacaggtcagaggac 825
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1025
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1015
Effective search space: 623210
Effective search space used: 623210
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no486_l15.g1 MSMg01no486_l15.g1 CHROMAT_FILE:
MSMg01no486_l15.g1 PHD_FILE: MSMg01no486_l15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:06 2005
(645 letters)
>mm_chr13_48101188_48102232
Length = 1045
Score = 1137 bits (588), Expect = 0.0
Identities = 626/646 (96%), Gaps = 14/646 (2%)
Strand = Plus / Minus
Query: 1 tgtcacatggggaggtaaaaatctgttgtaaccttttaatttaatctgtacacaggatgg 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 917 tgtcacatggggaggtaaaaatctgttgtaaccttttaatttaatctgtgcacaggatgg 858
Query: 61 cctgagcatgtttctgttttgtgtgatcacacacattttctaaactcccaccattggtgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 cctgagcatgtttctgttttgtgtgatcacacacattttctaaactcccaccattggtgt 798
Query: 121 tttctatgtaataaataaatgaataaataaataaataaataaataaataaataaataaat 180
||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 797 tttctatgt------------aataaataaataaataaataaataaataaataaataaa- 751
Query: 181 a-agattttagtaaaattaccctttttgtttacaaggaatatttcaggtaaagaagttgt 239
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 agagattttagtaaaattaccctttttgtttacaaggaatatttcaggtaaagaagttgt 691
Query: 240 ttacagattgtatcagacaaatgagaaatgggggcacttctaagtcttatttgagatttt 299
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 690 ttacagatggtatcagacaaatgagaaatgggggcacttttaagtcttatttgagatttt 631
Query: 300 ggtatactatataatactgatgtaaagagttttttctttctttctttctagcatggcatt 359
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 630 ggtatactatataatactgatgtaaagagttttttttttctttttttctagcatggcatt 571
Query: 360 ggtttaaaagacacttttaaacatttgtatttacattagaaagcatttgcgtgctctctg 419
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 570 ggtttaaaagacacttttaaacatttgtatttacatgagaaagcatttgcgtgctctctg 511
Query: 420 agctagactgctttttcaaaaagatctcgagatttgagtatcaaaattgcttgagttcca 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 agctagactgctttttcaaaaagatctcgagatttgagtatcaaaattgcttgagttcca 451
Query: 480 aatgtcttctttcctggttggacgtgatgggcaccctttgcttgactgcactattcaata 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 aatgtcttctttcctggttggacgtgatgggcaccctttgcttgactgcactattcaata 391
Query: 540 aatcaatatcctcccatttgctgaaagtttcatagtttcatttttcttaccatgtgaata 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 aatcaatatcctcccatttgctgaaagtttcatagtttcatttttcttaccatgtgaata 331
Query: 600 atattttactgtataagctcatcacatctccattatccgtccatca 645
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 atattttactgtataagctcatcacatctccattatccgtccatca 285
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space: 657225
Effective search space used: 657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
