BAC Information

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BAC

Clone NameMSMg01-486L24
Chromosome13 (Build37)
Map Location 37,679,599 - 37,722,616
singlet/doubletdoublet
Overlap genenone
Upstream geneNrn1, F13a1, Ly86, LOC100042794, LOC100042800
Downstream geneLOC100042802, LOC100041624, Rreb1, Ssr1, Cage1, Riok1, Dsp, 6530403A03Rik, Bmp6, Txndc5, Muted
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-486L24.T7 (MSMg01no486_l24.b1)MSMg01-486L24.TJ (MSMg01no486_l24.g1)
ACCAG565880AG565881
length728766
length of high quality
(start - end)		660 (54 - 713)621 (76 - 696)
definitionCHROMAT_FILE: MSMg01no486_l24.b1 PHD_FILE: MSMg01no486_l24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:08 2005CHROMAT_FILE: MSMg01no486_l24.g1 PHD_FILE: MSMg01no486_l24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,722,152 - 37,722,616)(37,679,599 - 37,680,219)
sequence
GCCCCGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAGCGCCAGCCTGGGCAATGCATCTCAACTCACTCCTG
CCAGCCAACCTGCTTCTCCCTCGGGTAGCCAGACCCCTTGGACAGGAGCT
GGGCTGTAGTGAGGGAAGCTTTACTGTGTGCTGGCAGAATCTTGGTTGGC
TGTGAGTGCTCAGGCAAAGAACACATACATACATACACACACACACACAC
ACACACACACACACACACACACACACACACACACACACACACACACGAGA
GCAACTTTGGAAAACTGGTTCAATTTGTTGGTGGCAACAAAGACCATTTA
ATATTTAAACCTTTGAGGGGGTGACTATATATCATTGGCTGGAGACAAGG
TGCTGGGGATGTCTCATTTGCATGAGGAAGAATTCCATGTACTCATGACC
TCTTAGAGGGAAAGGTAGTTTAACCTGGCTCCTGGGTACATGATCTCCTC
TGCTGAGGAGAAGGTTAGGGACACAGGGCTATGTGCACTGGGACATGCAG
GCCCGGGGCAGGGCATCCTACTCCTGTGGATCTCAGGACAAGATTTCCAG
GGTTTGGACATGTGTAGATCACATTCTTGTTCCAGGCCCACAGCTCTCCA
GTCCCCACGCACTCCCAAACCCAAAGTAAGAAATCATGCCTTTTTGAATG
AGAAGCGTAACGGCTTAGTGGTAAAGGC

GATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCAGGTCCATTTGATCTTCCAATTC
ATGGTGGGTAGATCTTAAAAATAGATCACCTCACTCAGTGGGTCCTCTCT
CCTGAACTTACTGAATCAGATGATCAGACCTCTTGGCTTTGGTGCTTTCT
ATCTGTTTCCTCGAAGGCAGAGTGGGGAGTGTCTGTAAGGTTCCTTCGCT
TAAATGTCCATCATTTCTTCTCACCTGGCTCCTTTATGAGATTGGAGATG
GGCAGCAGAGAGCTCTGCATTGACCAGGGTCTTTCTCTTGGCTAACTGGT
CACAGAATGGACACAGAGTACCCAAGTCCCCAGAGTAGCTGATCTGCTTT
GAGGAAAGTGACCTGACACCTAATCAAAGAGCATGTGACCCAGACGTAAG
CCAATCGGCATCTCATAAGCCTCTGGCCAAGGACAGGCTCTTGATCCACT
CAAAGGTGGTGAAATGCAGTAAGCCCTTGCCTGGAAATGTTCAGCAAAAT
AGCTTCCTCCCCACCCTGTCCTCCTCCTCTTCTTCTTCCTCCTCCTCTTC
CTGTTTCTCTCCAACTCCTCCTCTTACTCCTCATCCTCCTCCAAGTCCAA
CTCCTCTCCCTCCTCCCCCTCCTCCTCCAACCCTCCCTCCTACTTCTCCA
ACACCTCCTCCTCCAAGTCCAAATCCTCCCCTTCCTCCTCCTCCTCCCAC
ACTCCTCCTTCTCAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no486_l24.b1 MSMg01no486_l24.b1 CHROMAT_FILE:
MSMg01no486_l24.b1 PHD_FILE: MSMg01no486_l24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:08 2005
         (660 letters)



>mm_chr13_37721568_37722627
          Length = 1060

 Score =  899 bits (465), Expect = 0.0
 Identities = 465/465 (100%)
 Strand = Plus / Minus

                                                                        
Query: 196  acacacacacacacacacacacacacacacacacacacacacacacacgagagcaacttt 255
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1049 acacacacacacacacacacacacacacacacacacacacacacacacgagagcaacttt 990

                                                                        
Query: 256  ggaaaactggttcaatttgttggtggcaacaaagaccatttaatatttaaacctttgagg 315
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 989  ggaaaactggttcaatttgttggtggcaacaaagaccatttaatatttaaacctttgagg 930

                                                                        
Query: 316  gggtgactatatatcattggctggagacaaggtgctggggatgtctcatttgcatgagga 375
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929  gggtgactatatatcattggctggagacaaggtgctggggatgtctcatttgcatgagga 870

                                                                        
Query: 376  agaattccatgtactcatgacctcttagagggaaaggtagtttaacctggctcctgggta 435
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869  agaattccatgtactcatgacctcttagagggaaaggtagtttaacctggctcctgggta 810

                                                                        
Query: 436  catgatctcctctgctgaggagaaggttagggacacagggctatgtgcactgggacatgc 495
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809  catgatctcctctgctgaggagaaggttagggacacagggctatgtgcactgggacatgc 750

                                                                        
Query: 496  aggcccggggcagggcatcctactcctgtggatctcaggacaagatttccagggtttgga 555
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749  aggcccggggcagggcatcctactcctgtggatctcaggacaagatttccagggtttgga 690

                                                                        
Query: 556  catgtgtagatcacattcttgttccaggcccacagctctccagtccccacgcactcccaa 615
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689  catgtgtagatcacattcttgttccaggcccacagctctccagtccccacgcactcccaa 630

                                                         
Query: 616  acccaaagtaagaaatcatgcctttttgaatgagaagcgtaacgg 660
            |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629  acccaaagtaagaaatcatgcctttttgaatgagaagcgtaacgg 585


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 77
Number of extensions: 28
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space:   682500
Effective search space used:   682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no486_l24.g1 MSMg01no486_l24.g1 CHROMAT_FILE:
MSMg01no486_l24.g1 PHD_FILE: MSMg01no486_l24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:08 2005
         (621 letters)



>mm_chr13_37679399_37680419
          Length = 1021

 Score = 1170 bits (605), Expect = 0.0
 Identities = 617/621 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaggtccatttgatcttccaattcatggtgggtagatcttaaaaatagatcacctcact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcaggtccatttgatcttccaattcatggtgggtagatcttaaaaatagatcacctcact 260

                                                                       
Query: 61  cagtgggtcctctctcctgaacttactgaatcagatgatcagacctcttggctttggtgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagtgggtcctctctcctgaacttactgaatcagatgatcagacctcttggctttggtgc 320

                                                                       
Query: 121 tttctatctgtttcctcgaaggcagagtggggagtgtctgtaaggttccttcgcttaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttctatctgtttcctcgaaggcagagtggggagtgtctgtaaggttccttcgcttaaat 380

                                                                       
Query: 181 gtccatcatttcttctcacctggctcctttatgagattggagatgggcagcagagagctc 240
           ||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 gtccaccatttcttctcacccggctcctttatgagattggagatgggcagcagatagctc 440

                                                                       
Query: 241 tgcattgaccagggtctttctcttggctaactggtcacagaatggacacagagtacccaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcattgaccagggtctttctcttggctaactggtcacagaatggacacagagtacccaa 500

                                                                       
Query: 301 gtccccagagtagctgatctgctttgaggaaagtgacctgacacctaatcaaagagcatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtccccagagtagctgatctgctttgaggaaagtgacctgacacctaatcaaagagcatg 560

                                                                       
Query: 361 tgacccagacgtaagccaatcggcatctcataagcctctggccaaggacaggctcttgat 420
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 561 tgacccagacgtaagccaatcggcatctcataagcctctggccaagggcaggctcttgat 620

                                                                       
Query: 421 ccactcaaaggtggtgaaatgcagtaagcccttgcctggaaatgttcagcaaaatagctt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccactcaaaggtggtgaaatgcagtaagcccttgcctggaaatgttcagcaaaatagctt 680

                                                                       
Query: 481 cctccccaccctgtcctcctcctcttcttcttcctcctcctcttcctgtttctctccaac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cctccccaccctgtcctcctcctcttcttcttcctcctcctcttcctgtttctctccaac 740

                                                                       
Query: 541 tcctcctcttactcctcatcctcctccaagtccaactcctctccctcctccccctcctcc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcctcctcttactcctcatcctcctccaagtccaactcctctccctcctccccctcctcc 800

                                
Query: 601 tccaaccctccctcctacttc 621
           |||||||||||||||||||||
Sbjct: 801 tccaaccctccctcctacttc 821


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space:   617721
Effective search space used:   617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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