Query= MSMg01no487_j10.b1 MSMg01no487_j10.b1 CHROMAT_FILE:
MSMg01no487_j10.b1 PHD_FILE: MSMg01no487_j10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:14 2005
(655 letters)
>mm_chr13_42959649_42960703
Length = 1055
Score = 1199 bits (620), Expect = 0.0
Identities = 647/658 (98%), Gaps = 5/658 (0%)
Strand = Plus / Plus
Query: 1 gaattctaacc---caatacggctacatataatccagggtgaggctatctaatgtggtaa 57
||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||
Sbjct: 200 gaattctaacccaacaat--ggctacgtataatccagggtgaggctatctaatgtggtaa 257
Query: 58 tcactagatctgaatacatgtgactactgagggcttcgaatgtgactttgactattcctg 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tcactagatctgaatacatgtgactactgagggcttcgaatgtgactttgactattcctg 317
Query: 118 tggtgtgatataaacataaaatacaaattaaaagtcagacatagaaaaaggaatacataa 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tggtgtgatataaacataaaatacaaattaaaagtcagacatagaaaaaggaatacataa 377
Query: 178 tagtctatcagtgtttactaattacatgttgaaatcatattttgaatatattctaaagat 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tagtctatcagtgtttactaattacatgttgaaatcatattttgaatatattctaaagat 437
Query: 238 aatttcactatttttttctttacggtggctactataaattttaagattatgtatatggtc 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 aatttcactatttttttctttacggtggctactataaattttaagattatgtatatggtc 497
Query: 298 cctatcctaatgatttctattaatgaatgcttatctacgaaattcaaattattcaggtaa 357
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 498 cctatcctaatgatttctattgatgaatgcttatctacgaaattcaaattattcaggtaa 557
Query: 358 ttgatgtatgtcttcctattataattccttgcccactcacaggtccagtcccctgattat 417
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tcgatgtatgttttcctattataattccttgcccactcacaggtccagtcccctgattat 617
Query: 418 tttctaatatatcccaatgtgtcctcattgctattaagaaagtagttactccggcagctg 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tttctaatatatcccaatgtgtcctcattgctattaagaaagtagttactccggcagctg 677
Query: 478 tcacaacaggctgtacggtatttactacacctgcagggtgagacataaacaccattctgt 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tcacaacaggctgtacggtatttactacacctgcagggtgagacataaacaccattctgt 737
Query: 538 cattccacttatattttcctcgcacatatctggtctttgcaagtcagagcacggaatgcc 597
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 738 cattccacttagattttcctcgcacatatctggtctttgcaagtcagagcacggaaggcc 797
Query: 598 tgatgactgctaattcctcactggcttctctaaagagggtaatagcagtccctaccgg 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 tgatgactgctaattcctcactggcttctctaaagagggtaatagcagtccctaccgg 855
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space: 674025
Effective search space used: 674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no487_j10.g1 MSMg01no487_j10.g1 CHROMAT_FILE:
MSMg01no487_j10.g1 PHD_FILE: MSMg01no487_j10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:14 2005
(672 letters)
>mm_chr13_43096331_43097395
Length = 1065
Score = 1065 bits (551), Expect = 0.0
Identities = 639/675 (94%), Gaps = 15/675 (2%)
Strand = Plus / Minus
Query: 2 gtccaaattcatgtcggacacgcaagccccgggccttattttcaaacataaaccaaaagc 61
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 gtccaaattcatgttggacacgcaagccccgggccttattttcaaacataaaccaaaagc 806
Query: 62 cagtttgaattagagaggagactcttatacaaaagaacagtagaagacaagggaaatgta 121
||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 805 cagctggaattagagaggagactcttatacaaaagagcagtagaagacaagggaaatgta 746
Query: 122 aagttgttttgatagaagcaaagcagagagcaggactatctatgcatcaagtctttattt 181
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aagttgtttcgatagaagcgaagcagagagcaggactatctatgcatcaagtctttattt 686
Query: 182 aaatagaggtgagctgcacagtatgaaagaggaagcaagaacaatacctcttaagagcaa 241
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 685 aaatagaggtgagctgcacagtatgaaagaggaagcaagaacaataccgcttaagagcaa 626
Query: 242 attttt---gt-atttccaaaataaataaagtctcatgtatatgggtagactctagagtc 297
| || |||||||||||||||||||||||| |||||||||||||| | ||||||
Sbjct: 625 a-----aaagtgatttccaaaataaataaagtctcacgtatatgggtagacgccagagtc 571
Query: 298 aagagaaagtgctccacaaatcaccatcaagaaaccaggacgaaggatggaaatatgaaa 357
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 aagagggagtgctccacaaatcaccatcaagaaaccaggacgaaggatggaaatatgaaa 511
Query: 358 ataaagaccagctggctgggctcaccccttgtatctgactgataaaaattccagaatgga 417
||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 510 ataaagacc----ggctgggctcaccccttggatctgactgataaaaattccagaatgga 455
Query: 418 tgaggagagcaccaaagcaactaaaatataaacataaataaagttttccaaagccaagga 477
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 454 tgaggagagcaccaaagcaactaaaatataaaaataaataaagttttccaaagccaagga 395
Query: 478 acaggccattagatggaaaatgtcaagtagaggccaaacacactgactagtaaagctaac 537
||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 394 acaggcctttagatggaaaatgccaagtagaggccaaacac--tgactagtaaagctaac 337
Query: 538 cagcatggaagtctagaacactggggatatagagaacttacaaactaaagagaacgtact 597
||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 336 cagcacggaattctagaacactggggatatagagaacttacaaactaaggagaacgttct 277
Query: 598 aaagaaaaaagtgaccatctcattcaaagcaacccagaattcatcggacttcccaaaact 657
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 276 aaagaaaaaagtgaccatctcattcaaagcagcccagaattcatcggacttcccaaaact 217
Query: 658 actctcaagattaga 672
|||||||||||||||
Sbjct: 216 actctcaagattaga 202
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1065
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1055
Effective search space: 698410
Effective search space used: 698410
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
