BAC Information

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BAC

Clone NameMSMg01-488C17
Chromosome13 (Build37)
Map Location 23,944,480 - 23,945,099
singlet/doubletsinglet
Overlap geneSlc17a3
Upstream geneV1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2
Downstream geneSlc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16, LOC100042017, Cmah, 5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-488C17.T7 (MSMg01no488_c17.b1)MSMg01-488C17.TJ (MSMg01no488_c17.g1)
ACCAG566957AG566958
length671793
length of high quality
(start - end)		620 (44 - 663)---
definitionCHROMAT_FILE: MSMg01no488_c17.b1 PHD_FILE: MSMg01no488_c17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:00 2005CHROMAT_FILE: MSMg01no488_c17.g1 PHD_FILE: MSMg01no488_c17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATTCGAAGAGGATCCGCGGAATTCCATTGTTGCGAAGAGACACCATGAC
CAAGGCAACTCTTATAAAGGACAACATTTAATTGGGACTGGCTTATAGGT
TCAGAGATTCAGTCCATTATTACCAAGGCGGGAAGCATAGCAGCGTCCAG
GCAGGTGTGGTACTATCGAACAGGCTGAGAGTTTCCCATCGTGAACTCAA
GGCAGCCAAGAGAAGACTGAGCATCCTCAGGAGAGGGGTCTTAAAGCCCA
CCCCTACAGTGACACACTTCCTCTAACAAGGCCACACCCTCCCTAACAAG
ACCACATCTTCTAATAGTGCCACTCCCCGGGCCAAACATATTCAAACCAC
CATACTAGGCAAGATGTGAAAATCCTCTGGCTTCATATAAAGTGCTGCTC
TCCTGCACAGTCATCAGGATGCCACTGTGCCTTGTAGGCAGGAGGGGAAG
ATTTAGAAAGCAGTGCTTTCTAAGAGACAGAAAAAAACAATCCGAGGAGG
TAAATATAGCCACGGGGTTTGTCTTGGTTAAGCATAGCAAAGGGATAGAG
TCCTTAGCAAGTCTTGAACTTTCCAAAGAAAAGAATATATCAAACACTGA
CAGTAATTTGGGATAACTTCACTATTGGACCCGAGACTTTCATTTAGCTA
GAAACCAAGAAAGTACGGCTT

CCTGGCGGCCGCCTGATACTTACCCCGAGGTGAACTATAGAACTACAAAC
AAAATTCTGAGGGTGAGGCTTTCTCCCAGCCTTGCCAGCGAAAGCCTGTG
TCGCCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTAG
TAAAACACACAAAACAAACCAACAACAACAAAAAATTACAAACAACCACT
CACCCCCACATACCACCCCACCAACCACAAACACAACCCCCCCCACACCA
ACCACCCCCTACACCCCACAAAAACAAAAAAAAAACCCCACAAACCCCCC
CTTTTCTTTACCCAAAAAACACCAACAACAAAAAAAAACACCATCTCTCT
ACCCCCCCCACCAAACACCCAACCCACCCCCACCCACCAACATACCACCA
AAAAACCCCACACACAACAACCAACTAAAATCCCCAACACCAACCCCACC
ACCAAACCCAACAACAACACAACACCACACACCACAAAAAAAATCAAACC
CCCCCCCCCCCCTATACCACATAATCCAATACACACCCCAATTACAATAC
CCACAACAACCAAAACACACCTCCCCCCACCACACCCCCTCCACCAAACC
CACACAATACCCACCCCACCACAACAACACCCACACCACCCAATAACCCC
ACCCATCCCCAACATATCCACCCCCCCCCACATATAACACAAACTACAAA
ATCATCATCACAAACCACACCCCTCCACCCCCACACACAAAACCACCACC
ACCCCTACCCCACATCCCCCACCAACACCCCACATCTCCACAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no488_c17.b1 MSMg01no488_c17.b1 CHROMAT_FILE:
MSMg01no488_c17.b1 PHD_FILE: MSMg01no488_c17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:00 2005
         (620 letters)



>mm_chr13_23944280_23945299
          Length = 1020

 Score = 1176 bits (608), Expect = 0.0
 Identities = 617/620 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccatgaccaaggcaactcttataaaggacaacatttaattgggactggcttataggttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccatgaccaaggcaactcttataaaggacaacatttaattgggactggcttataggttca 260

                                                                       
Query: 61  gagattcagtccattattaccaaggcgggaagcatagcagcgtccaggcaggtgtggtac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagattcagtccattattaccaaggcgggaagcatagcagcgtccaggcaggtgtggtac 320

                                                                       
Query: 121 tatcgaacaggctgagagtttcccatcgtgaactcaaggcagccaagagaagactgagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatcgaacaggctgagagtttcccatcgtgaactcaaggcagccaagagaagactgagca 380

                                                                       
Query: 181 tcctcaggagaggggtcttaaagcccacccctacagtgacacacttcctctaacaaggcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcctcaggagaggggtcttaaagcccacccctacagtgacacacttcctctaacaaggcc 440

                                                                       
Query: 241 acaccctccctaacaagaccacatcttctaatagtgccactccccgggccaaacatattc 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acacccaccctaacaagaccacatcttctaatagtgccactccccgggccaaacatattc 500

                                                                       
Query: 301 aaaccaccatactaggcaagatgtgaaaatcctctggcttcatataaagtgctgctctcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaccaccatactaggcaagatgtgaaaatcctctggcttcatataaagtgctgctctcc 560

                                                                       
Query: 361 tgcacagtcatcaggatgccactgtgccttgtaggcaggaggggaagatttagaaagcag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgcacagtcatcaggatgccactgtgccttgtaggcaggaggggaagatttagaaagcag 620

                                                                       
Query: 421 tgctttctaagagacagaaaaaaacaatccgaggaggtaaatatagccacggggtttgtc 480
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 621 tgctttctaagagacagaaaaaaacaatccgaggaggtaaatgtagccacggggtttgtc 680

                                                                       
Query: 481 ttggttaagcatagcaaagggatagagtccttagcaagtcttgaactttccaaagaaaag 540
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 681 ttggttaagcatagcaaagggatagagtccttagcaagtcttgaagtttccaaagaaaag 740

                                                                       
Query: 541 aatatatcaaacactgacagtaatttgggataacttcactattggacccgagactttcat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aatatatcaaacactgacagtaatttgggataacttcactattggacccgagactttcat 800

                               
Query: 601 ttagctagaaaccaagaaag 620
           ||||||||||||||||||||
Sbjct: 801 ttagctagaaaccaagaaag 820


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space:   616100
Effective search space used:   616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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