Query= MSMg01no488_d20.b1 MSMg01no488_d20.b1 CHROMAT_FILE:
MSMg01no488_d20.b1 PHD_FILE: MSMg01no488_d20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:06 2005
(662 letters)
>mm_chr13_40205213_40206272
Length = 1060
Score = 940 bits (486), Expect = 0.0
Identities = 577/618 (93%), Gaps = 22/618 (3%)
Strand = Plus / Minus
Query: 1 acaggcatctctgccatgccctgatgaaaaaatgccttatgcacactctatctttttgtg 60
|||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||| ||
Sbjct: 889 acaggcatctttgccatgccatgatgaaaaaatgccttatgcacactctatctctttctg 830
Query: 61 ttttttagacaatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaatgtactctctt 120
|| |||||||||||| | |||||||||||||||||||||||||| |
Sbjct: 829 ttctttagacaattt---------------t-tgtgtgtgtgtgtgtaatgtactctcat 786
Query: 121 taatgtcatccccacttcccttacctccctcccaccctaagcactcacttccacaagtcc 180
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 785 taatgtcatccccacttcctttacctccctcccaccctaagtactcacttccacaagtcc 726
Query: 181 atttcttagatccatgtctttttgcactg-ttttttttggggggggggttgtctaatgag 239
||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||
Sbjct: 725 atttcttagatccatgtctttttgcactgtttttttttggggggggtgttg---aatgag 669
Query: 240 tttacccagaactgtctgtatgaccctgggtttgctgctttttactgaagcacagtgagt 299
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 668 tttacccagaactgtctgtatgaccctgggtttgctgcattttattgaagcacagtgagt 609
Query: 300 gcatctgtggagacacattaaacactatgtctggcctttctctgttctcttcatttcaca 359
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 608 gcatctgtggagacacattaaacactatgtctgacctttctctgctctcttcatttcaca 549
Query: 360 tggaca-tgtaactggtctatctcatcggatactgccttgtctgagaagcacctcccacg 418
|||| | |||| ||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct: 548 tgga-agtgtagctggtctatgtcatgggatactgccttgtctgagaagcacctcccacg 490
Query: 419 ctcacatggcagcccgcaactacctcattagcttattaatacctcaaatattttcataac 478
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 489 ctcacatggcagcctgcaactacctcattagcttactaatacctcaaatattttcataac 430
Query: 479 acttagtttcctgacatcatcttatttcacataacgttgtactaaaacaaaatgacaccc 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 acttagtttcctgacatcatcttatttcacataacgttgtactaaaacaaaatgacaccc 370
Query: 539 aaaccatctgtgcttaatgaatataatctgatgggctggacatgcagatatatgcatact 598
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 369 aaaccatctgtgcttaatgaatataatcagatgggctggacatgcagatatatgcatact 310
Query: 599 gatatctatatctatatc 616
||||||||||||||||||
Sbjct: 309 gatatctatatctatatc 292
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1060
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1050
Effective search space: 684600
Effective search space used: 684600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no488_d20.g1 MSMg01no488_d20.g1 CHROMAT_FILE:
MSMg01no488_d20.g1 PHD_FILE: MSMg01no488_d20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:06 2005
(618 letters)
>mm_chr13_40005924_40006939
Length = 1016
Score = 1079 bits (558), Expect = 0.0
Identities = 604/620 (97%), Gaps = 5/620 (0%)
Strand = Plus / Plus
Query: 1 ttacaatcctctcagctgttaatggcagggtctttatcttgttatgtttgtgaggtttct 60
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 201 ttacaatcctctcagctgttaatggcagggtctttattttgctatgtttgtgaggtttct 260
Query: 61 aacttttacgttttaagggtctttggttaaggcacatagccagagagtggcaggaaggaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 aacttttacgttttaagggtctttggttaaggcacatagccagagagtggcgggaaggaa 320
Query: 121 gtggcacccaagagtggcgctcattctagtgtctgcgttctagacgattctaccagaagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtggcacccaagagtggcgctcattctagtgtctgcgttctagacgattctaccagaagt 380
Query: 181 tcttagctcctttggactcaacactctatttaaccatgggcatgttttctggctttacca 240
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 tcttagctcctttggactcaacact--atttaaccatgggcatgttttctggctttacca 438
Query: 241 ttctgaaatgaaaacttggattaatagaatctataaacactgatctttatttccgtagat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ttctgaaatgaaaacttggattaatagaatctataaacactgatctttatttccgtagat 498
Query: 301 gactgcatctctcaatcctcattggatcaccttctatttgctgtagatggctcttaatac 360
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 499 gactgcatctctcaatcctcattggatcaccttctatttgctgtagatggctattaatac 558
Query: 361 agaaacgtgcaaccagtagtgtgcagaggacaagatcctgagaagtattcaaccct-aac 419
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 559 agaaacgtgcaaccagtagtgtgcagagaacaagatcctgagaagtattcaacccttaa- 617
Query: 420 tataccatctggaccatactcctttctcaaaaggctcagagatcaacacaagagaaagat 479
||||||||||||||||||||||| |||||||| |||||| ||||| || |||||||||||
Sbjct: 618 tataccatctggaccatactcctgtctcaaaatgctcagtgatcaccataagagaaagat 677
Query: 480 tctaagaaccagagatagtgggtgacaatagcaaaattgtatttttt-ggacattaaaaa 538
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 678 tctaagaaccagagatagtgggtgacaatagcaaaattgtatttttttggacattaaaaa 737
Query: 539 ggatgctgcacacaggtactcacggtagctgtgactgcgtgggggaagccctgggcaaga 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 ggatgctgcacacaggtactcacggtagctgtgactgcgtgggggaagccctgggcaaga 797
Query: 599 tcaagccagacaaagtccaa 618
|| |||||||||||||||||
Sbjct: 798 tcgagccagacaaagtccaa 817
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1016
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1006
Effective search space: 611648
Effective search space used: 611648
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
