BAC Information

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BAC

Clone NameMSMg01-488J18
Chromosome13 (Build37)
Map Location 23,710,188 - 23,851,688
singlet/doubletdoublet
Overlap geneHist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b
Upstream geneV1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d
Downstream geneHist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16, LOC100042017, Cmah, 5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-488J18.T7 (MSMg01no488_j18.b1)MSMg01-488J18.TJ (MSMg01no488_j18.g1)
ACCAG567292AG567293
length751758
length of high quality
(start - end)		676 (74 - 749)679 (74 - 752)
definitionCHROMAT_FILE: MSMg01no488_j18.b1 PHD_FILE: MSMg01no488_j18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:35 2005CHROMAT_FILE: MSMg01no488_j18.g1 PHD_FILE: MSMg01no488_j18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,710,188 - 23,710,864)(23,851,010 - 23,851,688)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGAGCGGCGGAA
TTCATGTAATTTCATAAAAAAATGTATTTTATCTAATTAATTAAGACATA
GTTTAATTAAATAACTCATCATGAACTAAAAATACCTGTCTTATAAATGC
AAGCAAGAACCAACATTAGGAACTCCAACTCTATTTCTTTAAAGAGGTCA
AGAAAGAGTAGCATGTAATTTCATGTGATACCAAAACAGAAAGGATAAAA
TTCATAACTAATTACTAACTGAGAATTAAATGGTGGAAGGAAATTGCAAC
TCAGTAAACGCTAAATTTTTTTCACGCAAATATTTTGACTTAAAAACTCC
CAAATCATTATTATGGAAAGGACAATGATGTTAGCTTTTTTTTTTCTTTC
CTTCATATTCTCTCTTTCTCTCTCTTTGTCTCACTATGTGGTCTTTATAG
GCTTGATTTGTAGACCAGTCTGCCAAACTCATAGAGATCTGCCTGCTTCT
AACTCCTGAGTGGCTGGGATTAAAGGCCTGCACCACCACATCCTATGGCT
TTCTTTCCTTTCAAGAAATTTATTATTTTTATTGTATGTGTATGATTTAT
ACATATGCCTATATTTATATATGTGCATTGCATGTGTACCCCAGGAGGCC
AGAAGAGGACCACCAGACAATGAGTACTGTATTTGTTAAGAGCTTATACT
TCGAGTCAGCATAACATGATGAGCATCTTGTAATAATTTTCATTTATTTA
A

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTGTTTTCCAACCGTGAATTTCTGGTA
GAAAAATGAACTATTCAGCATAGCTTCATCTTAAACTAATGCATATAATT
CATGGATAATACATCCTGGAAAGTTTCAGGAGGAGAGCAGACAGAAGAAC
AAGAAAATGTGATCTCTCTTGATGGTGATTGATCATTTTATCCCTCCTCT
AAATTCCTTTGGGAGGTATTTGTTTGTTATTAGGTAATGTGCCAGCCGCT
CCCTGAGGCCAGCAGAAAATTTTGGATTCTCATGAGCAGTAAATGTCATG
TAGATGCAGATCTTGGATCGCAGTAATCACGTGGGCCTTTAAGGTGGCTT
GGCCTTTTTCCAAAATATTCCTAACATATATATCTCCTTGGTGGACCTCT
ACTGTGGATAGGAACCTCTCACTTTTCCTTACATTACCAATTGTCATTCC
TTATTGAGGAATTGATTATGGCAGCACCATAGTGTGGCTTTTGCCTGGGG
ATGTGCGTAAAATGATTCATGATGTATATTCACTTTAAAAAACCTTCATA
TAGGTCATGAATTTAAGATGAGACTGGGCTACATTTTAAGTTCCAGGCTA
ACATGATTTATATACCAAGACAAAAGAACTCAGTGACATGATTTATCTGA
TAAAGTTGCTGCCAAGCTTGAAGACCTGAATTTAAGCTCTTGGAGCTAGA
AGGAGAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no488_j18.b1 MSMg01no488_j18.b1 CHROMAT_FILE:
MSMg01no488_j18.b1 PHD_FILE: MSMg01no488_j18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:35 2005
         (676 letters)



>mm_chr13_23709989_23711064
          Length = 1076

 Score = 1228 bits (635), Expect = 0.0
 Identities = 666/683 (97%), Gaps = 13/683 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtattttatctaattaattaagacatagtttaattaaataactcatcatgaactaaaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 gtattttatctaattaattaagacatagtttaattaaataactcatcatgaactaaaaat 259

                                                                       
Query: 61  acctgtcttataaatgcaagcaagaaccaacattaggaactccaactctatttctttaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 acctgtcttataaatgcaagcaagaaccaacattaggaactccaactctatttctttaaa 319

                                                                       
Query: 121 gaggtcaagaaagagtagcatgtaatttcatgtgataccaaaacagaaaggataaaattc 180
           ||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||
Sbjct: 320 gaggtcaagaaagagtagcatgtaatttcatgtgatatcaacacataaaggataaaattc 379

                                                                       
Query: 181 ataactaattactaactgagaattaaatggtggaaggaaattgcaactcagtaaacgcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ataactaattactaactgagaattaaatggtggaaggaaattgcaactcagtaaacgcta 439

                                                                       
Query: 241 aa----ttttttt---cacgcaaatattttgacttaaaaactcccaaatcattattatgg 293
           ||    |         ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aacacat------acacacgcaaatattttgacttaaaaactcccaaatcattattatgg 493

                                                                       
Query: 294 aaaggacaatgatgttagcttttttttttctttccttcatattctctctttctctctctt 353
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 494 aaaggacaatgatgttagcttttctttttctttccttcatattctctctttctctctctt 553

                                                                       
Query: 354 tgtctcactatgtggtctttataggcttgatttgtagaccagtctgccaaactcatagag 413
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 tgtctcactatgtggtctttataggcttgatttgtagaccagtctgccaaactcatagag 613

                                                                       
Query: 414 atctgcctgcttctaactcctgagtggctgggattaaaggcctgcaccaccacatcctat 473
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 atctgcctgcttctaactcctgagtggctgggattaaaggcctgcaccaccacatcctat 673

                                                                       
Query: 474 ggctttctttcctttcaagaaatttattatttttattgtatgtgtatgatttatacatat 533
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 ggctttctttcctttcaagaaatttattatttttattgtatgtgtatgatttatacatat 733

                                                                       
Query: 534 gcctatatttatatatgtgcattgcatgtgtaccccaggaggccagaagaggaccaccag 593
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 gcctatatttatatatgtgcattgcatgtgtaccccaggaggccagaagaggaccaccag 793

                                                                       
Query: 594 acaatgagtactgtatttgttaagagcttatacttcgagtcagcataacatgatgagcat 653
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 acaatgagtactgtatttgttaagagcttatacttcgagtcagcataacatgatgagcat 853

                                  
Query: 654 cttgtaataattttcatttattt 676
           |||||||||||||||||||||||
Sbjct: 854 cttgtaataattttcatttattt 876


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space:   709956
Effective search space used:   709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no488_j18.g1 MSMg01no488_j18.g1 CHROMAT_FILE:
MSMg01no488_j18.g1 PHD_FILE: MSMg01no488_j18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:35 2005
         (679 letters)



>mm_chr13_23850959_23852037
          Length = 1079

 Score = 1228 bits (635), Expect = 0.0
 Identities = 668/679 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgttttccaaccgtgaatttctggtagaaaaatgaactattcagcatagcttcatctta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 ctgttttccaaccgtgaatttctggtagaaaaatgaactattcagcatagcttcatctta 671

                                                                       
Query: 61  aactaatgcatataattcatggataatacatcctggaaagtttcaggaggagagcagaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 aactaatgcatataattcatggataatacatcctggaaagtttcaggaggagagcagaca 611

                                                                       
Query: 121 gaagaacaagaaaatgtgatctctcttgatggtgattgatcattttatccctcctctaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 gaagaacaagaaaatgtgatctctcttgatggtgattgatcattttatccctcctctaaa 551

                                                                       
Query: 181 ttcctttgggaggtatttgtttgttattaggtaatgtgccagccgctccctgaggccagc 240
           |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 550 ttcctttgggaggtatttctttgctattaggtaatgtgccagccgctccctgaggccagc 491

                                                                       
Query: 241 agaaaattttggattctcatgagcagtaaatgtcatgtagatgcagatcttggatcgcag 300
           ||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 agaaaacaatggattctcatgagcagtaaatgtcatgtagatgcagatcttggatcgcag 431

                                                                       
Query: 301 taatcacgtgggcctttaaggtggcttggcctttttccaaaatattcctaacatatatat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 taatcacgtgggcctttaaggtggcttggcctttttccaaaatattcctaacatatatat 371

                                                                       
Query: 361 ctccttggtggacctctactgtggataggaacctctcacttttccttacattaccaattg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ctccttggtggacctctactgtggataggaacctctcacttttccttacattaccaattg 311

                                                                       
Query: 421 tcattccttattgaggaattgattatggcagcaccatagtgtggcttttgcctggggatg 480
           |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tcattcctaattgaggaattaattatggcagcaccatagtgtggcttttgcctggggatg 251

                                                                       
Query: 481 tgcgtaaaatgattcatgatgtatattcactttaaaaaaccttcatataggtcatgaatt 540
           ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 250 tgcataaaatgattcatgatgtatattcactttaaaaacccttcatataggtcatgaatt 191

                                                                       
Query: 541 taagatgagactgggctacattttaagttccaggctaacatgatttatataccaagacaa 600
           |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 190 taagatgagactgggctacatagtaagttccaggctaacatgatttatataccaagacaa 131

                                                                       
Query: 601 aagaactcagtgacatgatttatctgataaagttgctgccaagcttgaagacctgaattt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 aagaactcagtgacatgatttatctgataaagttgctgccaagcttgaagacctgaattt 71

                              
Query: 661 aagctcttggagctagaag 679
           |||||||||||||||||||
Sbjct: 70  aagctcttggagctagaag 52


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space:   715161
Effective search space used:   715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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