NNNNCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG
CGCGGAATTCCCCTATTACTAGGAGATTTGTACATCCACCTTAACCTATT
CACAGATGGTTGGCTAACTTGAAAACCAGAACCAAAGTTCCAAAACTCTA
GAGAAAATGTAGAAAAACTGGGAGTAAAGGAGAGGAGTTATTCAAACAGA
CCTAGGCCCTCACTGGTCAGACCAGGTTCTTTGATCAGGGTGGTTCTCTT
GTAGGAGAGATTCAGAGCTCAAGAGTCTGCATAAAAGTACCTTGTAACTC
TGGGAATTTGGAAGGACAGATGTTGTACTCTAGTCATCCCTTTAAGGTTA
AGTTTTGTTTGGTTTATCTCTGTTTTACTCTTTGATGACAAACTGCACTG
TAGCTCAAAACCAACCCAGTCCAAGAATAGTCACATGCAATGAAACTAAA
ACACAATTGTTCTATCATAGGTGATAAAAAAGAAACCAACTTTGCTTCTG
GTTTTTGTCTCTGCTGGTAGCAGATATTCTGCCACAGGGCTACATATCCC
AATTAGTGCCAGAAGGGAGAGACCCTCGCATGAGTTCCAACAGGCCTGTG
GGTGCAGGTAGGATCACCACCACTGCTCAGAGGAACTCGCTCTGAACCCT
CAGGACACAGGAATTAAGGCGCTGAACTGGACAGGAGTCTTCCAGTCTCC
ATCTGTGCCCAGAGCTGATCCTGTGCCACAGAACTACNTACACAAATACT
ACATAGAGGGAGCTGGGN

NNNCCGAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCATTTTTAATAGCTGAGT
AGGACTCCATTGGGTAAATGTACATTTCATGTATCCATTCCTCTGTTGGA
GGACATTTGGGTTCTTTCCAGTTTCTGGCGATTATAAATAAGGCTGCTAT
GTACATAGTGGAGCATGTGGAAGACCAAAGTGTGAGTTCTTCAGTCCTTC
TTAGAAGGAGAACAAAATACTCACAGGAGCAAATATGGAGATAAAGTGTT
GAGCAGAGACTGAAGGAAAGGTCTTTCAGAGACTGTCCCACCTGGGGATT
CATCTCATATTCAGTTACTAAACCCAGACACTATCATGGATGCTAAGAAG
TGCATGCTGAAAGGAGCCTGATAGGACCTGCCAGAGCCTTACAGATACAG
AGGCGGATGTTCACAGACAATCATTGGACTGAGCACAGGGTCCCCAATAG
AGGAGTTAGAGAAAGGACTGAAAGAGTTGAAGGGGTTTGCAACCCCATAG
GAAAAACAACAATTTCAACCAACCAGACCCCCAGAGCTCACAGAGACTAA
GCCACCAACCAAGGAGTACACATGGCTCCAGCTGCATATGTAACTGAGGA
TGGTCTTGTCTGGCATCAATGGGAGGAAATGTCCTTGGTCCAATGAAGGC
TCCATAGATGCCCCAGTGTANGGAAATGGAGGGCAGNAAGGGGGGGGAAT
TGTTTTTTNTGTTTNT

Query= MSMg01no489_e14.b1 MSMg01no489_e14.b1 CHROMAT_FILE:
MSMg01no489_e14.b1 PHD_FILE: MSMg01no489_e14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:28 2005
         (612 letters)



>mm_chr13_25935762_25936767
          Length = 1006

 Score =  990 bits (512), Expect = 0.0
 Identities = 573/606 (94%), Gaps = 21/606 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagatttgtacatccaccttaacctattcacagatggttggctaacttgaaaaccagaac 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 603 gagatttgtacatccaccttaacctattcacagatggttggctaacctgaaaaccagaac 544

                                                                       
Query: 61  caaagttccaaaactctagagaaaatgtagaaaaactgggagtaaaggagaggagttatt 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 543 caaagttccaaaactctagagaaaatggagaaaaactgggagtaaaggagaggagttatt 484

                                                                       
Query: 121 caaacagacctaggccctcactggtcagaccaggttctttgatcagggtggttctcttgt 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 caaagagacctaggccctcactggtcagaccaggttctttgatcagggtggttctcttgt 424

                                                                       
Query: 181 aggagagattcagagctcaagagtctgcataaaagtaccttgtaactctgggaatttgga 240
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 423 aggagagattcagagctcaagagtctgcagaaaagtaccttgtaactctgggaatttgga 364

                                                                       
Query: 241 aggacagatgttgtactctagtcatccctttaaggttaagttttgtttggtttatctctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 aggacagatgttgtactctagtcatccctttaaggttaagttttgtttggtttatctctg 304

                                                                       
Query: 301 ttttactctttgatgacaaactgcactgtagctcaaaaccaacccagtccaagaatagtc 360
           |||||||||||||||||||||||||      |||||||||||||||||||||||| ||||
Sbjct: 303 ttttactctttgatgacaaactgca------ctcaaaaccaacccagtccaagaaaagtc 250

                                                                       
Query: 361 acatgcaatgaaactaaaacacaattgttctatcataggtgat---------------aa 405
           |||||||||||||||||||||||||||||| ||||||||||||               ||
Sbjct: 249 acatgcaatgaaactaaaacacaattgttccatcataggtgataaaaaaaaaaaaaaaaa 190

                                                                       
Query: 406 aaaagaaaccaactttgcttctggtttttgtctctgctggtagcagatattctgccacag 465
           |||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 189 aaaaaaaaacaactttgcttctggtttttgtctctgctagtagcagatattctgccgcag 130

                                                                       
Query: 466 ggctacatatcccaattagtgccagaagggagagaccctcgcatgagttccaacaggcct 525
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 129 ggctacatatcccaattagtgccagaagggagagaccctcgaatgagttccaacaggcct 70

                                                                       
Query: 526 gtgggtgcaggtaggatcaccaccactgctcagaggaactcgctctgaaccctcaggaca 585
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  gtgagtgcaggtaggatcaccaccactgctcagaggaactcgctctgaaccctcaggaca 10

                 
Query: 586 caggaa 591
           ||||||
Sbjct: 9   caggaa 4


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1006
Length adjustment: 10
Effective length of query: 602
Effective length of database: 996
Effective search space:   599592
Effective search space used:   599592
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)