BAC Information

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BAC

Clone NameMSMg01-489H01
Chromosome13 (Build37)
Map Location 23,318,219 - 23,318,844
singlet/doubletsinglet
Overlap genenone
Upstream geneOTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12
Downstream geneV1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-489H01.T7 (MSMg01no489_h01.b1)MSMg01-489H01.TJ (MSMg01no489_h01.g1)
ACCAG567923AG567924
length749745
length of high quality
(start - end)
620 (54 - 673)547 (83 - 629)
definitionCHROMAT_FILE: MSMg01no489_h01.b1 PHD_FILE: MSMg01no489_h01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:40 2005CHROMAT_FILE: MSMg01no489_h01.g1 PHD_FILE: MSMg01no489_h01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:40 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NNGGGGCGCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCACTGACCTACATATACTAAGTTCACTGACCTACATAT
ACTAAGTTCACTGACCTACATATACTAAGTTCACTGACCTATATATACTA
AGCAGTTTCTTTAAAAGGAAACACTTAATTCTCTTTACTGAGCAACGGAG
GATGAGAGGGGGTTTGGACCTCAGAATCTCAACTCCTCTGATACCAAAAA
GATTGGAACTAATCTCTCAGCTGTCGCCTCACAAATGCTGAAGCGTCTCT
ATCCCCATGTTCAGCATTAGACACCCCTGGGGTAGGTTTCCACTGAGCTT
CATGTTATGTCTCTAAAAAGCTTTCAGAGTTGAAGTACTTTTCAGTGTGT
TAAGAAAAACTCTTGAAAGGCAAACCTGGTGGCCTGTGCCTTTAATCCTA
GCACTTAAGAGACAAAAGCAGATCTCTGAGTTCAAAGCTAATGGGGTCTA
CAGAGAGAATTTCAGGACAGCTTGGAAAACACTGTCTCAAGAAAATAAAA
AGAAAGAAAGAAGAAAGGAAGGAAGAAAGAAAGAAGGAAGAAGCAAAAAG
AAAAACTGTGTTTGCATCAGCCACCATCTTCACCTGTTAATATTATGACT
CCATCAGGAAGATAACTTTCATAAATTTGTTCACAAAATGTCTTATGCCT
ATACTTTACTATACTTTTAATACAGCCATCACTTTCTTTGACTTAGTCT
NAAAATTCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACACTGGAGAAAAGCCCT
ATAAATGTGATGAATGTGGGAAGGCCTTTAGTCAGAGGACCCATCTTGTT
CAGCATCAGAGAATTCACACTGGTGAGAAGCCATATACTTGTACCGAGTG
TGGGAAATCCTTCAGCCAGAGAGGTCACTTTATGGAGCACCAGAAAATTC
ATACAGGAGAAAAACCTTTCAAGTGTGAGGAGTGTGAGAAAACCTTCACC
AGGAGCACACACCTCACTCAACATCAGAAAATTCACACTGGGGAGAAAAC
TTACAAGTGTAATGAATGTGGGAAGGCCTTCAATGGCCCATCAACGTTTA
TCCGTCACCATATGATTCATACTGGAGAAAAGCCTTATGAGTGTAATGAA
TGTGGCAAAGCCTTCAGCCAGCACTCCAACCTGACTCAGCATCAGAAAAC
ACACACTGGGGAGAAACCCTATGACTGTGCAGAATGTGGGAAAGCCTTTA
GTTACTGGTCATCCCTAGCTCAGCACCTGAAAATTCATACAGGAGAGAAG
CCCTACAAGTGTAGCGACTGCGGGAAGGCCTTCAGTTACTGCTCCTCCCT
TACTCANNATCGGAGGATTCACACCCGAGAGAAGCCCTTTGAGTGCAGTG
AGTGTGGAAAGGCTTTCAGCTATCTGTCAACCTTAATCAGCATCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no489_h01.b1 MSMg01no489_h01.b1 CHROMAT_FILE:
MSMg01no489_h01.b1 PHD_FILE: MSMg01no489_h01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:40 2005
         (620 letters)



>mm_chr13_23318012_23319032
          Length = 1021

 Score = 1062 bits (549), Expect = 0.0
 Identities = 602/627 (96%), Gaps = 15/627 (2%)
 Strand = Plus / Plus

                                                                       
Query: 8   ttcactgacctacatatactaagttcactgacctacatatactaagttcactgacctaca 67
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ttcactgacctacatatacttagttcactgacctacatatactaagttcactgacctaca 267

                                                                       
Query: 68  tatactaagttcactgacctatatatactaagcagtttctttaaaaggaaacacttaatt 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tatactaagttcactgacctatatatactaagcagtttctttaaaaggaaacacttaatt 327

                                                                       
Query: 128 ctctttactgagcaacggaggatgagagggggtttggacctcagaatctcaactcctctg 187
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 328 ctctttactgagcaacggaggatgagagggggtttggacctcagactctcaactcctctg 387

                                                                       
Query: 188 ataccaaaaagattggaactaatctctcagctgtcgcctcacaaatgctgaagcgtctct 247
           |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct: 388 ataccaaaaagattggaactaatctctcagttgtcgcctcacaaatgttgaagcgtctct 447

                                                                       
Query: 248 atccccatgttcagcattagacacccctggggtaggtttccactgag-cttcatgttatg 306
           ||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||
Sbjct: 448 atccccatgttcagcattagacacccctgggataggtttccactgaggcttcatattatg 507

                                                                       
Query: 307 tctctaaaaagctttcagagttg-aagtacttttcagtgtgttaagaaaaactcttgaaa 365
           |||||||||| |||| ||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 508 tctctaaaaa-ctttaagagttggaagtatttttcagtgtgttaagaaaaactcttgaaa 566

                                                                       
Query: 366 ggcaaacctggtggcctgtgcctttaatcctagcacttaagagacaaaagcagatctctg 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ggcaaacctggtggcctgtgcctttaatcctagcacttaagagacaaaagcagatctctg 626

                                                                       
Query: 426 agttcaaagctaatggggtctacagagagaatttcaggacagcttggaaaacactgtctc 485
           ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 627 agttcaaagctaacggggtctacagagagaatttcaggacagctaggaaaacactgtctc 686

                                                                       
Query: 486 aagaaaataaaaagaaagaaagaagaaaggaaggaagaaa------------gaaagaag 533
           ||||||||||||||||||||||||||||||||||||||||            ||||||||
Sbjct: 687 aagaaaataaaaagaaagaaagaagaaaggaaggaagaaatgaaggaagaaagaaagaag 746

                                                                       
Query: 534 gaagaagcaaaaagaaaaactgtgtttgcatcagccaccatcttcacctgttaatattat 593
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 gaagaagcaaaaagaaaaactgtgtttgcatcagccaccatcttcacctgttaatattat 806

                                      
Query: 594 gactccatcaggaagataactttcata 620
           |||||||||||||||||||||||||||
Sbjct: 807 gactccatcaggaagataactttcata 833


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1021
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1011
Effective search space:   616710
Effective search space used:   616710
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)