Query= MSMg01no489_h17.b1 MSMg01no489_h17.b1 CHROMAT_FILE:
MSMg01no489_h17.b1 PHD_FILE: MSMg01no489_h17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:44 2005
(574 letters)
>mm_chr13_111961961_111962934
Length = 974
Score = 978 bits (506), Expect = 0.0
Identities = 554/570 (97%)
Strand = Plus / Plus
Query: 5 gaattccagaatgttcccagacaagagagcaaagaaagaataaagaagcaatgcgtcctg 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagaatgaagccagacaagagagcaaagaaagaataaagaagcaatgcgtcctg 264
Query: 65 tcctcggaggcgacttcggaagtcacaacagattcacgcttccagacacagttcctcgtc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcctcggaggcgacttcggaagtcacaacagattcacgcttccagacacagttcctcgtc 324
Query: 125 caaagtttctcccctccacacacctcaatcacaaggaaacatgaagagggagatagcacg 184
|||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||| |
Sbjct: 325 caaagtttctcccctccacacatctcaatcacaaggaagcatgaagagggaggtagcatg 384
Query: 185 tccttacacttaacccagcccacagctgccttctacgcagggatcacatctgcaatagca 244
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 385 tccttacacttaacccagcccacagctgccttctacgcagggatcgcatctgcaatagca 444
Query: 245 aggggcaatctctgccacataggttatctaggatatttaaaaatgtcggtaagatcctga 304
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 445 aggggcaatctctgccacataggttatctaggatatttaaacatgtcggtaagatcctga 504
Query: 305 cattagaatcctctgactatggcactgcagaggagggagcagtcctcatcttccatctaa 364
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 505 cattagaatcctctgactgtggcactgcagaggagggagcagccctcatcttccatctaa 564
Query: 365 cccaccctgtgcagtcttgcttccccagcggcacaaggactggcactgtccactgggtga 424
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cccaccctgtgcagtcttacttccccagcggcacaaggactggcactgtccactgggtga 624
Query: 425 aaactgaataaggttttaggtctctggctcgcacacattgacggtctgcgctatttgcag 484
||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||
Sbjct: 625 aaactgaataaggttttaggtctctggcttgcacacattgaaggtctgcgctgtttgcag 684
Query: 485 aggggagttacaaaatgcttcctgctgaaaagctcactaagaaaagcaaagtgtgatggt 544
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agggaagttacaaaatgcttcctgctgaaaagctcactaagaaaagcaaagtgtgatggt 744
Query: 545 tgctactaaaagtatcagtcatttaaaaca 574
||||||||||||||||||||||||||||||
Sbjct: 745 tgctactaaaagtatcagtcatttaaaaca 774
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space: 543696
Effective search space used: 543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no489_h17.g1 MSMg01no489_h17.g1 CHROMAT_FILE:
MSMg01no489_h17.g1 PHD_FILE: MSMg01no489_h17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:44 2005
(457 letters)
>mm_chr13_112090645_112091501
Length = 857
Score = 810 bits (419), Expect = 0.0
Identities = 446/455 (98%)
Strand = Plus / Minus
Query: 1 tcaggtctttgccaagacctcaggtttttcccagctctttggagcagtgcctggtcacag 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 619 tcaggtctttgccaagacctcaggtttttcccagctctttggagcagcgcctggtcacag 560
Query: 61 agtaggtccagccctggaaatggctttcttggatgctctccagcttgaacaggtaaagtt 120
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 559 agtaggtccagccctggaactggctttcttggatgctctccagcttaaacaggtaaagtt 500
Query: 121 gaggtggtcatgttcattgggtgtgcatcagcgctggtgggaactggtcaggtgaatttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gaggtggtcatgttcattgggtgtgcatcagcgctggtgggaactggtcaggtgaatttc 440
Query: 181 agccaagaccaagggtagaagttcatgagccccttgccaggatgcatcggtgaatggaag 240
||||||||||||||||||||| | ||||||||||||||||| ||| ||||||||||||||
Sbjct: 439 agccaagaccaagggtagaaggtaatgagccccttgccaggctgcgtcggtgaatggaag 380
Query: 241 gaccataggttctcagtgcatgatttgacaccggaccagggattttagaattcagacagg 300
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 379 gaccataggttctcagtgcatgatttgacacctgaccagggattttagaattcagacagg 320
Query: 301 acagcctcctgtgtacagcatcaaaatgacgacactactctcatgagttctttcctccca 360
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 atagcctcctgtgtacagcatcaaaatgacgacactactctcatgagttctttcctccca 260
Query: 361 tgttgcttctttgtgaagactgacgttaagaggctggaagattcatttttaaagtgtcag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tgttgcttctttgtgaagactgacgttaagaggctggaagattcatttttaaagtgtcag 200
Query: 421 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 455
|||||||||||||||||||||||||||||||||||
Sbjct: 199 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 165
Score = 70.3 bits (36), Expect = 3e-16
Identities = 36/36 (100%)
Strand = Plus / Minus
Query: 420 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 455
||||||||||||||||||||||||||||||||||||
Sbjct: 780 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 745
Score = 68.4 bits (35), Expect = 1e-15
Identities = 35/35 (100%)
Strand = Plus / Minus
Query: 420 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 454
|||||||||||||||||||||||||||||||||||
Sbjct: 778 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 744
Score = 60.7 bits (31), Expect = 2e-13
Identities = 35/37 (94%), Gaps = 2/37 (5%)
Strand = Plus / Minus
Query: 420 gtgtgtgtgtgtgtgtgtgtgtgtgtgtg--tgtgtg 454
||||||||||||||||||||||||||||| ||||||
Sbjct: 772 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatgtgtg 736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 64
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 5
Length of query: 457
Length of database: 857
Length adjustment: 10
Effective length of query: 447
Effective length of database: 847
Effective search space: 378609
Effective search space used: 378609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
