Query= MSMg01no489_n12.b1 MSMg01no489_n12.b1 CHROMAT_FILE:
MSMg01no489_n12.b1 PHD_FILE: MSMg01no489_n12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:14 2005
(478 letters)
>mm_chr13_93430424_93431301
Length = 878
Score = 824 bits (426), Expect = 0.0
Identities = 463/478 (96%), Gaps = 5/478 (1%)
Strand = Plus / Plus
Query: 1 tgtaaagatgccagcgtatatcataactgattcagtcatcagccattggccacttaactc 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 tgtaaagatgccagcgtatatcataactgattcagtcatcagccattggccactt----- 260
Query: 61 aaccaccattctccctctgtgaggaaagagcggggacctgaaattcccaatcttcagtgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaccaccattctccctctgtgaggaaagagcggggacctgaaattcccaatcttcagtgt 320
Query: 121 catgtggctgacttctggcaggcagattccactctacagtgactggggagggggctcacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catgtggctgacttctggcaggcagattccactctacagtgactggggagggggctcacc 380
Query: 181 aagagtcatggcattaagcatagactcaggagtggtttaaagggggttatgaataccagg 240
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagagtcatggcattaagtatagactcaggagtggtttaaagggggttatgaataccagg 440
Query: 241 atacttcttgcccacgcgtcaaatcccagtggttttagagggtcgtattccaggttttct 300
| ||| ||||||||| |||||||| |||||||||||||||| |||||||||| |||||||
Sbjct: 441 acactccttgcccacccgtcaaattccagtggttttagaggctcgtattccatgttttct 500
Query: 301 tgctgtgtcacagtagcacactctgaaaggatgtttgggtctttcctagttggcctgctg 360
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 501 tgctgtgtcacagtagcacactctgaagggatgtttgtgtctttcctagttggcctgctg 560
Query: 361 ttgcggatgtgctggctgctccctctgctgtggctgctgccctaagttccgacagtctcg 420
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgcggatctgctggctgctccctctgctgtggctgctgccctaagttccgacagtctcg 620
Query: 421 gaccacccgcttcatgtatttattctacttcatcctggtcatcgccctctgctgtgtg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaccacccgcttcatgtatttattctacttcatcctggtcatcgccctctgctgtgtg 678
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space: 406224
Effective search space used: 406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no489_n12.g1 MSMg01no489_n12.g1 CHROMAT_FILE:
MSMg01no489_n12.g1 PHD_FILE: MSMg01no489_n12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:14 2005
(556 letters)
>mm_chr13_93675600_93676555
Length = 956
Score = 942 bits (487), Expect = 0.0
Identities = 539/561 (96%), Gaps = 10/561 (1%)
Strand = Plus / Minus
Query: 1 actttgaaaataaaatggtttccactttatcttcagatgtatgagcccaaaatagtacca 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 756 actttgaaaataaaatggtttccactttatcttcagatgtaagagcccaaaatagtacca 697
Query: 61 agacatgtttagtgacacagttcaaatggcaagcctgggggttcccatgccatttggttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 agacatgtttagtgacacagttcaaatggcaagcctgggggttcccatgccatttggttt 637
Query: 121 cctttgctctgacaaccacaaatccatcctaca-tttattccgcaaatcatgttttctag 179
||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||
Sbjct: 636 cctttgctctgacaaccacaaatccatccta-agtttattccgcaaatcatgtgggctag 578
Query: 180 atgagagacaccagctctgttgatggggatggacagtctgcctcagaagcagagaattcg 239
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 atgagagacacctgctctgttgatggggatggacagtctgcctcagaagcagagaattcg 518
Query: 240 cttanntcccctctggcaccttgcccttatcaagctgagag----attttagtaccacag 295
|| | |||||||||||||||| |||||||||||||||||| | ||||||||||
Sbjct: 517 ctcatttcccctctggcacctttcccttatcaagctgagagagaaa----agtaccacag 462
Query: 296 agcatgttagtatcccccacacctgcgaagttatgccaaaggagaaaggagggccccgtc 355
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 461 agcatgttagcatcccccacacctgcgaagttatgccaaaggagaaaggatggccccgtc 402
Query: 356 tgccagtatctgtcacattccatgccctcatttggatgcatgggcttctccaccgagctt 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tgccagtatctgtcacattccatgccctcatttggatgcatgggcttctccaccgagctt 342
Query: 416 tacttttacaaaagcatgagggacaaaagctaaacaaataaattacaaaacatttaaaat 475
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 341 tacttttacaaaagcatgagggacaaaagctaaacaaacaaattacaaaacatttaaaat 282
Query: 476 gatgagtgttaagaataaaatatattaggaaaggggagtaaggagcccaaacatttccta 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 gatgagtgttaagaataaaatatattaggaaaggggagtaaggagcccaaacatttccta 222
Query: 536 tttccttttaaaaattgtgtg 556
|||||||||||||||||||||
Sbjct: 221 tttccttttaaaaattgtgtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space: 516516
Effective search space used: 516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
