Query= MSMg01no489_o09.b1 MSMg01no489_o09.b1 CHROMAT_FILE:
MSMg01no489_o09.b1 PHD_FILE: MSMg01no489_o09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:18 2005
(647 letters)
>mm_chr13_112886215_112887265
Length = 1051
Score = 1191 bits (616), Expect = 0.0
Identities = 641/652 (98%), Gaps = 6/652 (0%)
Strand = Plus / Plus
Query: 1 ctcactgtaagcggatatttccattatccatagattagatagagagatgctccaggtgtg 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcactgtacgcggatatttccattatccatagattagatagagagatgctccaggtgtg 260
Query: 61 catatccacagatgcctgtctccgttgtcatctcaaggagaccgtgctgcagctaagtga 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgtatccacagatgcctgtctccgttgtcatctcaaggagaccgtgctgcagctaagtga 320
Query: 121 tgactcctccattgggcaaacctgtctgaggatgctgcttccatcacaatggccccggtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 tgactcctccattgggcaaacctgtctgaggatgctgcttccatcacaatggcccaggtc 380
Query: 181 ccggaggaggatgcataaacagcaacgtcaaagtggcttcaggctgaggttgctgtgaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccggaggaggatgcataaacagcaacgtcaaagtggcttcaggctgaggttgctgtgaaa 440
Query: 241 tgtgtttctgcgctggtgatctgtgggcactgcattgttctggtctgtggggccccttta 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtggttctgcgctggtgatctgtgggcactgcattgttctggtctgtggggccccttta 500
Query: 301 aacctctttcctgtatcatcaattgtcatcaaattggtcaccacataccctttctgttga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacctctttcctgtatcatcaattgtcatcaaattggtcaccacataccctttctgttga 560
Query: 361 tgatagagcaatcgatgagttgaaaagaaaactggctagctgtcatttttttttctctta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 561 tgatagagcaatcgatgagttgaaaagaaaactggctagctgtcatttttttt-ctctta 619
Query: 421 tctctttactatctccactcctcagtaccaaagatgacccatgctctacgcaacaagacc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tctctttactatctccactcctcagtaccaaagatgacccatgctctacgcaacaagacc 679
Query: 481 atgaaaaaaggtgtctata-----aaaaaaaaaatctagaactttaattattaaggggag 535
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 680 atgaaaaaaggtgtctatatataaaaaaaaaaaatctagaactttaattattaaggggag 739
Query: 536 aaaaatcaacatcttataaatttaactattttaaagcaatcaattcagtagtccttaagt 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aaaaatcaacatcttataaatttaactattttaaagcaatcaattcagtagtccttaagt 799
Query: 596 aaactcccatttcatgttaccatgatccgtccccatatgtccatctcctccg 647
||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 800 aaactcccatttcatgtgaccatgatccgtccccatatgtccatctcctccg 851
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1051
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1041
Effective search space: 663117
Effective search space used: 663117
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no489_o09.g1 MSMg01no489_o09.g1 CHROMAT_FILE:
MSMg01no489_o09.g1 PHD_FILE: MSMg01no489_o09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:18 2005
(163 letters)
>mm_chr13_113043419_113043980
Length = 562
Score = 279 bits (144), Expect = 8e-80
Identities = 158/163 (96%), Gaps = 1/163 (0%)
Strand = Plus / Minus
Query: 1 gaaagacagcagggctggaaatcagcaagccccgtgaagatgcattccagggncccggag 60
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 362 gaaagacagcagggctgtaaatcagcaagccccgtgaagatgcattccagggtcccggag 303
Query: 61 gggggtgggggggaaagctgtacacaaaagcccctcttctaagtcttcaggaatgctgtg 120
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gggggt-ggggggaaagctgcacacaaaagcccctcttctaagtcttcaggaatgctgtg 244
Query: 121 agtggccttggaggtctcggggttagactgcggggctgggaac 163
|||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 243 agtggccttggaggtctcagggttagactgcggggctgggaac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 163
Length of database: 562
Length adjustment: 8
Effective length of query: 155
Effective length of database: 554
Effective search space: 85870
Effective search space used: 85870
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
