BAC Information

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BAC

Clone NameMSMg01-489O22
Chromosome13 (Build37)
Map Location 17,775,269 - 17,775,839
singlet/doubletsinglet
Overlap gene5033411D12Rik
Upstream genenone
Downstream gene2810021B07Rik, Cdc2l5, Rala, LOC434585, LOC382732, 1600012F09Rik, Vdac3-ps1, LOC625310, 4930448F12Rik, Pou6f2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-489O22.T7 (MSMg01no489_o22.b1)MSMg01-489O22.TJ (MSMg01no489_o22.g1)
ACCAG568291AG568292
length7801,192
length of high quality
(start - end)		575 (48 - 622)---
definitionCHROMAT_FILE: MSMg01no489_o22.b1 PHD_FILE: MSMg01no489_o22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:21 2005CHROMAT_FILE: MSMg01no489_o22.g1 PHD_FILE: MSMg01no489_o22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCAGCATTTGCGAGGCTAGGGCAGAAGGACTGCCATGAGTTCA
AGGTCAGCCTGATCTGCAGTTAATTCCATTCCAGCCTGGGATACAAAGGG
AAACCCTGTCACTAAAGCACACCAAAAACACATAAACATCTCACTACCAG
AAAAAGAAGCAAAAGGAGTAATTAATACATTTATTTTAAAATTCATTTTG
ATGAATACATGATCAAGGACAGTCAGTAAAATTATGAGGTTAGGAAAGGA
TAATTAGGCTAAGAGATCACACAATATACTATATCAATAACAGACAAGTG
AAACCAGGACTTTAATCCCAGCACTCAGGAGGCATAGGCAGGATGCTCTC
TGAAATTGAAGCCGGCCTGGTCTGCAGAGTGAGTTCCAGGACAGCCATGG
CTACATGAAGAAACCCTGTCTTGAAAACAAACAAACAAACAAAGCAGACA
AGTGAATACATAAATGAATAGGGAAGCAAGTATAATAAGAAAATTAAATA
TTACACAATGAAGAAATTTCAGTTGACTGAGAAATGTTAAATTATTGAAG
ATATAGTTGGGGAAACTGATTATACACATAGAAAAAAAGGGACTGTGCCT
GTTCTTATTAATTGATTAAATTCTACATAGATTCCAGAACTAAATATCAA
TACAATTTTAATAGTTAAGGTGCTAGAAAAATGAAAGAAATGTTTACACT
TTTATTTGAGGAAGCTTTTATTTTCAAAAN

ACCGCCGACTCCACGCTCGACAGGCACAAGCGCTATACTTACACCACCCC
ACCACTTCATGAAATATCCTCCCCCCAAGTTCTCATCGGTGGTGCGGGGG
ATAAAAGAGAAACGAGAACAATACAGAACAGGCGACCCCCCACTTTTTTT
TTTTCCTGTTCTCGCGCCCCCCCCATATATACTAAACCGCGCGACACCCA
ATTACATTTTCACACCCCACCCCAACAATCTAATTTACCTGACCTATTTT
CACCCTCACCTCACCTCACCCACTGTATTCAAGAGACACGCACAAAAAAG
AGGTTTTTTGTATAAGATAGGGGGGTAGTGTCGCAACAGAGTGCTACCGA
AAGCGCGTGACGATCAAAAGGCACCACCCGGACACAACGACTCCCCCGCA
TTGTCCGTATTATAGGGTCTTCTAACCGTTACGACAATTGACAGTCCACC
CACAAAACAAAAAGAACAAAACACCACATGAATAGTACCACAGGCGACAC
CCCGCGCATATTTGTGAAAGCGCATGGCAGTTTATATCAGCATACACTCA
AGCTAACAGAGCGGTAGTGATATGAGGCGCCTGGATGAAATGTTACCCCG
CTTTTGTGCGTAGAGAAAGCCAACAAGATTATTTTATCACCAGGACGAGC
CCCACAACCTGCAAATAGACACAGCTAAAAAGTCACCACATGAAATATAA
CAAAGTATCCGAGCTCCAGTCACGTCAGACACGCTTCATAAAAATGTAAG
CTCTGACGTTCGCAGAGGATGGACGCACCACAAGGTGGTACACGGTGGTA
TTTTGAGAGAAGACAAACTCGACCTCGTGCAACAATTTTCGCGTCTCACC
CCCCAGCATGAGATAAATCCACACGTGATCATCGTGCGCCATTAAGCTAT
NTATTTAGACAGAACCAGCCATATACACACGATATAATAGAGAACAAGTC
CGCCGATACGAGAACAGACCACCGAAATAACAGAGACGCAATATTAAATT
GGTGGTGCGCGGTGTGTAATCGTCTCGGGACGCGACGTATGTTGCCAGCC
TATTCGCTATTCGTCGGCGAATGGATGAGCGCTAATATATATAGCCGCGC
CGACANCGAGCGCGTGTATATCCTCATTGACGTAATGATATCGCTCCTAA
GATAATTATTNTACACTCACGAGCGCGCAAACACATACCACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no489_o22.b1 MSMg01no489_o22.b1 CHROMAT_FILE:
MSMg01no489_o22.b1 PHD_FILE: MSMg01no489_o22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:21 2005
         (575 letters)



>mm_chr13_17775065_17776039
          Length = 975

 Score = 1073 bits (555), Expect = 0.0
 Identities = 567/571 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcagcatttgcgaggctagggcagaaggactgccatgagttcaaggtcagcctg 64
           ||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcagcacctgagaggctagggcagaaggactgccatgagttcaaggtcagcctg 264

                                                                       
Query: 65  atctgcagttaattccattccagcctgggatacaaagggaaaccctgtcactaaagcaca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atctgcagttaattccattccagcctgggatacaaagggaaaccctgtcactaaagcaca 324

                                                                       
Query: 125 ccaaaaacacataaacatctcactaccagaaaaagaagcaaaaggagtaattaatacatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccaaaaacacataaacatctcactaccagaaaaagaagcaaaaggagtaattaatacatt 384

                                                                       
Query: 185 tattttaaaattcattttgatgaatacatgatcaaggacagtcagtaaaattatgaggtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tattttaaaattcattttgatgaatacatgatcaaggacagtcagtaaaattatgaggtt 444

                                                                       
Query: 245 aggaaaggataattaggctaagagatcacacaatatactatatcaataacagacaagtga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aggaaaggataattaggctaagagatcacacaatatactatatcaataacagacaagtga 504

                                                                       
Query: 305 aaccaggactttaatcccagcactcaggaggcataggcaggatgctctctgaaattgaag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaccaggactttaatcccagcactcaggaggcataggcaggatgctctctgaaattgaag 564

                                                                       
Query: 365 ccggcctggtctgcagagtgagttccaggacagccatggctacatgaagaaaccctgtct 424
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctggcctggtctgcagagtgagttccaggacagccatggctacatgaagaaaccctgtct 624

                                                                       
Query: 425 tgaaaacaaacaaacaaacaaagcagacaagtgaatacataaatgaatagggaagcaagt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgaaaacaaacaaacaaacaaagcagacaagtgaatacataaatgaatagggaagcaagt 684

                                                                       
Query: 485 ataataagaaaattaaatattacacaatgaagaaatttcagttgactgagaaatgttaaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ataataagaaaattaaatattacacaatgaagaaatttcagttgactgagaaatgttaaa 744

                                          
Query: 545 ttattgaagatatagttggggaaactgatta 575
           |||||||||||||||||||||||||||||||
Sbjct: 745 ttattgaagatatagttggggaaactgatta 775


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space:   545225
Effective search space used:   545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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