Query= MSMg01no490_d22.b1 MSMg01no490_d22.b1 CHROMAT_FILE:
MSMg01no490_d22.b1 PHD_FILE: MSMg01no490_d22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:47 2005
(209 letters)
>mm_chr13_81010152_81010760
Length = 609
Score = 323 bits (167), Expect = 5e-93
Identities = 193/205 (94%), Gaps = 7/205 (3%)
Strand = Plus / Plus
Query: 1 cccctagttgagaagttgaaggcagcctgtgactactgagggaaggagagattctgtttt 60
|||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||
Sbjct: 208 cccctagttgagaagt-gaaggcaatctgtgactactgagggaaggagagattcagtttt 266
Query: 61 cttcaggtccatcccactagtaatagtagttgttcatgcctaagtggtcagtcctatacc 120
||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 267 cttcaggtccatccccctagta------gttgttcatgcctaagtggtcagtcctatacc 320
Query: 121 aagtgcctatgggcaacattaacttggtgtggtaggaggaagaggacatgggcatggggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagtgcctatgggcaacattaacttggtgtggtaggaggaagaggacatgggcatggggg 380
Query: 181 tggggggaatgggatgagttggagg 205
|||||||||||||| ||||||||||
Sbjct: 381 tggggggaatgggaagagttggagg 405
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 209
Length of database: 609
Length adjustment: 9
Effective length of query: 200
Effective length of database: 600
Effective search space: 120000
Effective search space used: 120000
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no490_d22.g1 MSMg01no490_d22.g1 CHROMAT_FILE:
MSMg01no490_d22.g1 PHD_FILE: MSMg01no490_d22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:47 2005
(603 letters)
>mm_chr13_81162721_81163723
Length = 1003
Score = 1143 bits (591), Expect = 0.0
Identities = 600/603 (99%)
Strand = Plus / Minus
Query: 1 actctcgcacttgcgcacaaggcttgtttactagttaggcacagcggaagccagcgccat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 actctcgcacttgcgcacaaggcttgtttactagttaggcacagcggaagccagcgccat 682
Query: 61 cttataatggcgattgcttgcggcacggctctccacaactaggtcctttccttctctctt 120
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cttataatggcgattgctcgcagcacggctctccacaactaggtcctttccttctctctt 622
Query: 121 cctctgagatcctactttacaaatcagatacatatatctatggacagacacatatcagga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cctctgagatcctactttacaaatcagatacatatatctatggacagacacatatcagga 562
Query: 181 gccatgacgatggctggctctcaccaaagcattttcaaatttcaaatgtgagtatggaag 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gccatgacaatggctggctctcaccaaagcattttcaaatttcaaatgtgagtatggaag 502
Query: 241 tttcaataactaaaaagcaatgagagcaattatttttgccttaagtcaaagatggatgtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttcaataactaaaaagcaatgagagcaattatttttgccttaagtcaaagatggatgtg 442
Query: 301 taaaaggaaaaggtacaaattgcacaataaattttaaggagagaaaaagtgagggccagg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaaaggaaaaggtacaaattgcacaataaattttaaggagagaaaaagtgagggccagg 382
Query: 361 gatttgggaaatctcctaatttcacaaaaatttgttttaagacctctgagttcctaacat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatttgggaaatctcctaatttcacaaaaatttgttttaagacctctgagttcctaacat 322
Query: 421 taagtacattattaacctgatatattttgttttatgagacaggttttttgtatatagccc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taagtacattattaacctgatatattttgttttatgagacaggttttttgtatatagccc 262
Query: 481 ctggctatcttagaactcgatatgtagaccaggctagccttgaagtcacacagatcattt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctggctatcttagaactcgatatgtagaccaggctagccttgaagtcacacagatcattt 202
Query: 541 tgcctctgccttcccagtggtgagatcagaggcacatgccaccatgaccagttcagcttg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcctctgccttcccagtggtgagatcagaggcacatgccaccatgaccagttcagcttg 142
Query: 601 ata 603
|||
Sbjct: 141 ata 139
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space: 588849
Effective search space used: 588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
