Query= MSMg01no490_e20.b1 MSMg01no490_e20.b1 CHROMAT_FILE:
MSMg01no490_e20.b1 PHD_FILE: MSMg01no490_e20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:51 2005
(534 letters)
>mm_chr13_21478828_21479760
Length = 933
Score = 1017 bits (526), Expect = 0.0
Identities = 532/534 (99%), Gaps = 1/534 (0%)
Strand = Plus / Plus
Query: 1 cattcacaatgatttaatgctaagaaagctgtttaaggcactctcacagaattcctaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattcacaatgatttaatgctaagaaagctgtttaaggcactctcacagaattcctaaat 260
Query: 61 taggtaaaggattaaaggattttagcacagtaacctcaccttcacctctgccctgccaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taggtaaaggattaaaggattttagcacagtaacctcaccttcacctctgccctgccaag 320
Query: 121 ttggggtacttggcaaaaaacaaaaacaaagcagttctacattgattcaatctaaaacat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttggggtacttggcaaaaaacaaaaacaaagcagttctacattgattcaatctaaaacat 380
Query: 181 cattttttttttaaaagatatacaaatggttttggtgagaatttccagataatgggtttt 240
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ca-ttttttttaaaaagatatacaaatggttttggtgagaatttccagataatgggtttt 439
Query: 241 tagagctatgtaggaaatctcaccagtatatttaataaatgtctattagcacctgtatac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tagagctatgtaggaaatctcaccagtatatttaataaatgtctattagcacctgtatac 499
Query: 301 aaggcacaaagcaggacataagagttccaagtctgaccacatgtgaagggcccaatagcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aaggcacaaagcaggacataagagttccaagtctgaccacatgtgaagggcccaatagcc 559
Query: 361 taatgaaggatcagagcaacacccccaaagcataaccattccctcaagagatatgaagtg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 taatgaaggatcagagcaacacccccaaagcataaccattccctcaagagatatgaagtg 619
Query: 421 caggacaagggaaggcaatttgacagtcaggaagcccatttagttccaatgggtgaggac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 caggacaagggaaggcaatttgacagtcaggaagcccatttagttccaatgggtgaggac 679
Query: 481 tcttgtagacaactcttctatgaaattaatttttttttcctagtcaccttctag 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tcttgtagacaactcttctatgaaattaatttttttttcctagtcaccttctag 733
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 933
Length adjustment: 10
Effective length of query: 524
Effective length of database: 923
Effective search space: 483652
Effective search space used: 483652
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no490_e20.g1 MSMg01no490_e20.g1 CHROMAT_FILE:
MSMg01no490_e20.g1 PHD_FILE: MSMg01no490_e20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:51 2005
(681 letters)
>mm_chr13_21650506_21651586
Length = 1081
Score = 1239 bits (641), Expect = 0.0
Identities = 671/681 (98%)
Strand = Plus / Minus
Query: 1 catattttcaatctaacaccagcccagttgccacctaagccagctaagattgtcttttca 60
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 881 catattttcaatctaacaccagcccagttgccacctaagccggttaagattgtcttttca 822
Query: 61 cttctgatttagaaccaatagaaccctgggtgttgcctggagtaatagtatctatgcata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 821 cttctgatttagaaccaatagaaccctgggtgttgcctggagtaatagtatctatacata 762
Query: 121 tgtttattaatgtaataagttctacaccagagtaaaacaacaaatttccagattggatga 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 761 tgtttattaatgtaataagttctacaccagagtaaaacaacaaatttccagattagatga 702
Query: 181 gtatgtaagaagtaaaggggtgtaaatgttttctcttccattcaaactaaactccaaggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 gtatgtaagaagtaaaggggtgtaaatgttttctcttccattcaaactaaactccaaggg 642
Query: 241 gaaactccacatggcttaaaatatgcaatgtgtattgatttcaatctttcagttgtagca 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 gaaactccacagggcttaaaatatgcaatgtgtattgatttcaatctttcagttgtagca 582
Query: 301 aagatgtgatattaaaagcttaagctgggtattcctgacaagtgacttcctcaggatgtg 360
||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||
Sbjct: 581 aagatgtgatattaaaagctttagctgggcattcctgacaagtgacctcctcaggatgtg 522
Query: 361 caccagaagatataaatcttatctaaaatcatggtcagtaaatctcatttattaacttga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 caccagaagatataaatcttatctaaaatcatggtcagtaaatctcatttattaacttga 462
Query: 421 tataggctgaaactaatacgttcaccattaatcttctactgctcagtgggaatgaattta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tataggctgaaactaatacgttcaccattaatcttctactgctcagtgggaatgaattta 402
Query: 481 aaataggaaagcattgcaatctgacatacattattaagctactttcatgggtttacactc 540
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 401 aaataggaaagcattgcaatctgacatacattattaaggtactttcatgggtttacactc 342
Query: 541 tcctgcccctgcctcaaaaacccacagaaatcctaaactctggtccctacttttagcata 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 341 tcctgcccctgcctcaaaaacccacagaaatcctaaactctggtccctacttttaacata 282
Query: 601 tataattatgtaattgtataacatgacatagttaatttagttagcatcaattcaatgtga 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tataattatgtaattgtataacatgacatagttaatttagttagcatcaattcaatgtga 222
Query: 661 ccattagactttttctctttt 681
|||||||||||||||||||||
Sbjct: 221 ccattagactttttctctttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space: 718641
Effective search space used: 718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
