BAC Information

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BAC

Clone NameMSMg01-490E21
Chromosome13 (Build37)
Map Location 55,378,467 - 55,542,382
singlet/doubletdoublet
Overlap geneNsd1, Rab24, Prelid1, Mxd3, Lman2, Rgs14, Slc34a1, Pfn3, F12
Upstream geneLOC100040535, Cplx2, Thoc3, LOC100040543, 4732471D19Rik, 4833439L19Rik, Arl10, D13Wsu177e, Higd2a, Cltb, Ubxd8, Rn4.5s-ps3, Rnf44, BC040758, Gprin1, Sncb, Eif4e1b, Tspan17, Unc5a, Hk3, Uimc1, LOC622707, Zfp346, Fgfr4
Downstream geneGprk6, Prr7, Dbn1, Pdlim7, Dok3, Ddx41, BC021381, Tmed9, B4galt7, Caml, Ddx46, B230219D22Rik, 2310047H23Rik, Pcbd2, Catsper3, Pitx1, H2afy, BC027057, Neurog1, Cxcl14, LOC100040926, AU042651
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-490E21.T7 (MSMg01no490_e21.b1)MSMg01-490E21.TJ (MSMg01no490_e21.g1)
ACCAG568575AG568576
length768763
length of high quality
(start - end)		615 (75 - 689)601 (81 - 681)
definitionCHROMAT_FILE: MSMg01no490_e21.b1 PHD_FILE: MSMg01no490_e21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:51 2005CHROMAT_FILE: MSMg01no490_e21.g1 PHD_FILE: MSMg01no490_e21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,378,467 - 55,379,081)(55,541,782 - 55,542,382)
sequence
TTTCCCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAGAGGAGG
GNNGGAANNAAGCTTTCCCATTCAAGGTGAAAGTAGAATTAGAACCAGGG
AGTGAGCATCACAGATGTTGATGCAGAGTGTTTTCTTTCTAATTTGCATA
GAATGCCCAAGGGGGGCATTGCCTAGGAAACACAGATCTTGGAAGGACAA
ATAAGTAATCAAATAAACTTAAGAATGTTTTCTCTCCCTTAGTGAAACCT
TTAAATGGAACAGCTCAAAAAAAGTTCCAGTGGAACAGCCTCAGAGCAGT
TAGTGGCAGGGCATGAGGCGCCCACTACCCGTCCAATCACAGCAGGGTTA
GAACTAACATTGCATGCAGTCCGCCCGCGTGATTGGCTGAACATCTGTAA
GTGCTTAATGGTTAGACAAATAGCAGCCCAGAGGGAGGAGGGGGTCAGAT
GGAGGAGACATCAATAATACAGATGTGGGACATTATTTTTTCTCTGCAAG
GGAGAACTGCTGATTCACAGGACTGCTGCCAGCCCCAAGGAGATTCTTGA
AGAGGGTGTAGAACATGATCCTGGGATGTCTGCATCCAAAAAACTGCAGG
TTGAAAGAGGCGGAGGAGCGGCACTCAAGGAGAATGTGTGTCAGGTAGGA
GATGTTTGTCTTACTTTTTGTCGCATGTGTACTTTTTTGAGACAGGCCCT
TTATCTCTCTTAAGACCATATCTTGGTTAGAGAAAATGCTCACATATGAT
TCCTTAGGAGNCCCTAAG

TTTGCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGGTAGGTGACCTCTATG
TTAATCTGTTAGGTCCATCTCTACAGATATTCCATTACCCGGGTGTGGGG
GGCTGGAAACTGCTGCTGACCCATTGTCCTTGCCTCAGGCTAGATTACTG
CCAATTTGAAGCCTGTCATGGAATCAGCCTAGCCTTCTCAAACCAGAATC
CAGTTCCTCAGTCCCCTGAAGCCATAGTTTGTGTGCTTGTAGTCATGTAA
AAGGTCCATTGGGTTGAGCTGTTAGCGGGAAGGGGAGCTGCCTCTTGGCA
GCCTTCCCTATGTCAAGCGGGGTGACTGGGTGAGTAAGGGTACCAAGATG
TTGAAGACGATGGACTGGGTACTGTCTGGTCCCCCCAATTCCTTTTGAAC
AAGTATGTCTGCAACCTCTTGAAAGCCATGCCCCAAGTCTCTGCTAAAAA
GAAATGGAGCTGAGTATGGGACAGGCCTATAATCTTGCTTAGAGAGCCTG
GCAGGAGGGGTGAGGGTTCAAAGCCAGCCTGAGTTACTCTGTCTCTGCAT
TCTCATGAGTATCAGACATCAAAGAATAAGACTTTGGTGTTTCCCATTCT
GTAAGCCCCCAGCCCAGCTTTGCTGGGAGAGAACCAAGACAGAGAGAGGG
TATCTGTCTGCCCTGGGTCACAGCGGGGGATGGAGAAAACCAAGAGTTCT
TAGGAACAGGAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no490_e21.b1 MSMg01no490_e21.b1 CHROMAT_FILE:
MSMg01no490_e21.b1 PHD_FILE: MSMg01no490_e21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:51 2005
         (615 letters)



>mm_chr13_55378267_55379281
          Length = 1015

 Score = 1174 bits (607), Expect = 0.0
 Identities = 613/615 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtgaaagtagaattagaaccagggagtgagcatcacagatgttgatgcagagtgtttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtgaaagtagaattagaaccagggagtgagcatcacagatgttgatgcagagtgtttt 260

                                                                       
Query: 61  ctttctaatttgcatagaatgcccaaggggggcattgcctaggaaacacagatcttggaa 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 261 ctttctaatttgcatagaatgcccaaggggggcattgcttaggaaacacagatcttggaa 320

                                                                       
Query: 121 ggacaaataagtaatcaaataaacttaagaatgttttctctcccttagtgaaacctttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggacaaataagtaatcaaataaacttaagaatgttttctctcccttagtgaaacctttaa 380

                                                                       
Query: 181 atggaacagctcaaaaaaagttccagtggaacagcctcagagcagttagtggcagggcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atggaacagctcaaaaaaagttccagtggaacagcctcagagcagttagtggcagggcat 440

                                                                       
Query: 241 gaggcgcccactacccgtccaatcacagcagggttagaactaacattgcatgcagtccgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaggcgcccactacccgtccaatcacagcagggttagaactaacattgcatgcagtccgc 500

                                                                       
Query: 301 ccgcgtgattggctgaacatctgtaagtgcttaatggttagacaaatagcagcccagagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccgcgtgattggctgaacatctgtaagtgcttaatggttagacaaatagcagcccagagg 560

                                                                       
Query: 361 gaggagggggtcagatggaggagacatcaataatacagatgtgggacattattttttctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaggagggggtcagatggaggagacatcaataatacagatgtgggacattattttttctc 620

                                                                       
Query: 421 tgcaagggagaactgctgattcacaggactgctgccagccccaaggagattcttgaagag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgcaagggagaactgctgattcacaggactgctgccagccccaaggagattcttgaagag 680

                                                                       
Query: 481 ggtgtagaacatgatcctgggatgtctgcatccaaaaaactgcaggttgaaagaggcgga 540
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 681 ggtgtagaacatgatcctgggatgtctgcatccaagaaactgcaggttgaaagaggcgga 740

                                                                       
Query: 541 ggagcggcactcaaggagaatgtgtgtcaggtaggagatgtttgtcttactttttgtcgc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggagcggcactcaaggagaatgtgtgtcaggtaggagatgtttgtcttactttttgtcgc 800

                          
Query: 601 atgtgtacttttttg 615
           |||||||||||||||
Sbjct: 801 atgtgtacttttttg 815


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space:   608025
Effective search space used:   608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no490_e21.g1 MSMg01no490_e21.g1 CHROMAT_FILE:
MSMg01no490_e21.g1 PHD_FILE: MSMg01no490_e21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:51 2005
         (601 letters)



>mm_chr13_55541553_55542553
          Length = 1001

 Score = 1162 bits (601), Expect = 0.0
 Identities = 601/601 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagggtaggtgacctctatgttaatctgttaggtccatctctacagatattccattaccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 cagggtaggtgacctctatgttaatctgttaggtccatctctacagatattccattaccc 771

                                                                       
Query: 61  gggtgtggggggctggaaactgctgctgacccattgtccttgcctcaggctagattactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 gggtgtggggggctggaaactgctgctgacccattgtccttgcctcaggctagattactg 711

                                                                       
Query: 121 ccaatttgaagcctgtcatggaatcagcctagccttctcaaaccagaatccagttcctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 ccaatttgaagcctgtcatggaatcagcctagccttctcaaaccagaatccagttcctca 651

                                                                       
Query: 181 gtcccctgaagccatagtttgtgtgcttgtagtcatgtaaaaggtccattgggttgagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 gtcccctgaagccatagtttgtgtgcttgtagtcatgtaaaaggtccattgggttgagct 591

                                                                       
Query: 241 gttagcgggaaggggagctgcctcttggcagccttccctatgtcaagcggggtgactggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 gttagcgggaaggggagctgcctcttggcagccttccctatgtcaagcggggtgactggg 531

                                                                       
Query: 301 tgagtaagggtaccaagatgttgaagacgatggactgggtactgtctggtccccccaatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 tgagtaagggtaccaagatgttgaagacgatggactgggtactgtctggtccccccaatt 471

                                                                       
Query: 361 ccttttgaacaagtatgtctgcaacctcttgaaagccatgccccaagtctctgctaaaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 ccttttgaacaagtatgtctgcaacctcttgaaagccatgccccaagtctctgctaaaaa 411

                                                                       
Query: 421 gaaatggagctgagtatgggacaggcctataatcttgcttagagagcctggcaggagggg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 gaaatggagctgagtatgggacaggcctataatcttgcttagagagcctggcaggagggg 351

                                                                       
Query: 481 tgagggttcaaagccagcctgagttactctgtctctgcattctcatgagtatcagacatc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tgagggttcaaagccagcctgagttactctgtctctgcattctcatgagtatcagacatc 291

                                                                       
Query: 541 aaagaataagactttggtgtttcccattctgtaagcccccagcccagctttgctgggaga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 aaagaataagactttggtgtttcccattctgtaagcccccagcccagctttgctgggaga 231

            
Query: 601 g 601
           |
Sbjct: 230 g 230


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space:   585681
Effective search space used:   585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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