Query= MSMg01no491_c01.b1 MSMg01no491_c01.b1 CHROMAT_FILE:
MSMg01no491_c01.b1 PHD_FILE: MSMg01no491_c01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:56 2005
(484 letters)
>mm_chr13_41216978_41217860
Length = 883
Score = 766 bits (396), Expect = 0.0
Identities = 443/480 (92%), Gaps = 35/480 (7%)
Strand = Plus / Minus
Query: 5 gaattcttactctccgtatctagaattaattcctaagcacactatgtgctgagcctatga 64
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gaattcttactctccg-aggtagaattaattcctaagcacactatgtgctgagcctatga 424
Query: 65 ttggtcttccaatacagaaccaagtatccttttcttctctacaatgccatctgctctcct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ttggtcttccaatacagaaccaagtatccttttcttctctacaatgccatctgctctcct 364
Query: 125 tggtcagaacacataagaagtaatacgccctcagaaggtgcctgagacagttgtgacaat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tggtcagaacacataagaagtaatacgccctcagaaggtgcctgagacagttgtgacaat 304
Query: 185 ctcagcaccaaggagaatttctttggaaacatgaaagtttccttttcaaaatccagtagg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ctcagcaccaaggagaatttctttggaaacatgaaagtttccttttcaaaatccagtagg 244
Query: 245 gatttgatgtgaccctttcttatatactgggagagcatttgtgatattaaccttcattgt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 gatttgatgtgaccctttcttatatactgggagagcatttgtgatattaaccttcattgt 184
Query: 305 caattttattagatttagaatcacacacacacacacacacagagagagagagagagagag 364
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 183 caattttattagatttagaat----cacacacacacacacagagagagagagagagagag 128
Query: 365 agagagagagagagagagagagagagagagagagagagagagagagagagagagagaaac 424
||||||||||||||||||||||||||||||||
Sbjct: 127 agagagagagagagagagagagagagagagag---------------------------- 96
Query: 425 acacgtctgtgtgtatctgtgaagggagtttcaggaagacgtggatagcacctacaccta 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 --acgtctgtgtgtatctgtgaagggagtttcaggaagacgtggatagcacctacaccta 38
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 94
Number of extensions: 38
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 883
Length adjustment: 10
Effective length of query: 474
Effective length of database: 873
Effective search space: 413802
Effective search space used: 413802
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no491_c01.g1 MSMg01no491_c01.g1 CHROMAT_FILE:
MSMg01no491_c01.g1 PHD_FILE: MSMg01no491_c01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:56 2005
(549 letters)
>mm_chr13_41049333_41050279
Length = 947
Score = 942 bits (487), Expect = 0.0
Identities = 533/549 (97%), Gaps = 2/549 (0%)
Strand = Plus / Plus
Query: 1 tcttccctccacacacagaccaggagtgagctggagagctgcagatttgtgactactctg 60
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctttcctccacacacaggccaggagtgagctggagagctgcagatttgtgactactctg 260
Query: 61 gcacgtggcaggtgacatcaaagagaagggatttttccctgaataggcaagaactggaaa 120
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 gcacatggcaggtgacatcaaagagaagggatttttccctgaatagacaagaactggaaa 320
Query: 121 ccccaagtcactggctaccttttgtggcagagtggggggatggaacgagcgagggtctca 180
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 ccccaagtcactggctgccttttgtggcagagtggggggatggaatgagcgagggtctca 380
Query: 181 tgtagctcagggtcacctagaacttgctgtgtagccaaggaagtccttgaaatctgggtt 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 tgtagctcagggtcacctagaacttgctgtgtagctaaggaagtccttgaaatctgggtt 440
Query: 241 ctgacacttctgtctcctaagtgctgggactgcagaaatgtgccccatgctctgccagcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgacacttctgtctcctaagtgctgggactgcagaaatgtgccccatgctctgccagcc 500
Query: 301 agtgtcatttttgcagatggcccaggactgaactcatgacctttagaagggtggccgata 360
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 501 agtgtcatttttgcagatggcccaggactgaactcatgaccttcagaagggtggccaata 560
Query: 361 ctgttaaccgctgagccacctccccagccagtcacttgtcatttctatagacgcttctaa 420
|||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||
Sbjct: 561 ctgttaaccgctgagccatctccccagccattcacttgtcatttctatagac--ttctaa 618
Query: 421 agaaggagctccatcaggtctggatacccaccactctgagcacgacccagcacatacttg 480
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 619 agaaggagctccatccggtctggacacccaccactctgagcacgacccagcacatacttg 678
Query: 481 gcaggtttaccaacctgcttaacaaacctgccgtaacaaagcagcacaggctggacagct 540
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 679 gcaggtttaccaacctgcttaacgaacctgccgtaacaaagcagcacaggctggacagct 738
Query: 541 tatcaaaca 549
|||||||||
Sbjct: 739 tatcaaaca 747
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 947
Length adjustment: 10
Effective length of query: 539
Effective length of database: 937
Effective search space: 505043
Effective search space used: 505043
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
