Query= MSMg01no491_j01.b1 MSMg01no491_j01.b1 CHROMAT_FILE:
MSMg01no491_j01.b1 PHD_FILE: MSMg01no491_j01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:31 2005
(684 letters)
>mm_chr13_26317716_26318799
Length = 1084
Score = 1216 bits (629), Expect = 0.0
Identities = 668/681 (98%), Gaps = 2/681 (0%)
Strand = Plus / Minus
Query: 5 gaattccaatgtattttacacaatgtaggtgatctaggtcaaggctcagcctgaaaaact 64
||||||||| |||||| | ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 708 gaattccaaagtatttcagacaatataggtgatctaggtcaaggctcagcctgaaaaact 649
Query: 65 actgtgtgattgaacagagagtaacttagaatagggcatagcttgagctcaatagacaag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 actgtgtgattgaacagagagtaacttagaatagggcatagcttgagctcaatagacaag 589
Query: 125 aaaagcagtttaaatatatatataacaacaaaacccagctttcagttgtgaattgtcata 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 aaaagcagtttaaatatatatataacaacaaaacccagctttcagttgtgaattgtcata 529
Query: 185 cagaaatccagctcatgatagtcagcaagccactgaatgagaaaggctggcatgatgaaa 244
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 cagaaatccagctcattatagtcagcaagccactgaatgagaaaggctggcatgatgaaa 469
Query: 245 ggaaaattatctgaatccacaaataccaaaaagaaagaagaaaataaaagaaaatatatc 304
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 468 ggaaaattatctgaatccacaaataacaaaaagaaagaaaaaaataaaagaaaatatatc 409
Query: 305 tttattcataaatgtgggtgagataatcaaaaaaaggaaaatcagtttagaaggataagc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 tttattcataaatgtgggtgagataatcaaaaaaaggaaaatcagtttagaaggataagc 349
Query: 365 tttgattctctctgaaaattaaaaaaaatatggatggacgacatttcatccagagactaa 424
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 348 tttgattctctctgaaaattaaaaaaaa-atggatggacaacatttcatccagagactaa 290
Query: 425 -tttttttttcataaaataggagagaattctctctaatcaatgctggaacaccaaggagc 483
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 ttttttttttcataaaataggagagaattctctctaatcaatgctggaacaccaaggagc 230
Query: 484 acattccaaggagacttttgagctaaatcatattaaatggtgctgatagcttaaattaag 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 acattccaaggagacttttgagctaaatcatattaaatggtgctgatagcttaaattaag 170
Query: 544 atgagaattgagaattgaaggatagattagacagtgtagatattactagggatacctacg 603
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 169 atgagaattgagaattgaaggatagattagacagtgtagatattactagggacacctatg 110
Query: 604 aaacatttctgagcatagagaatccttggtcagagcagatttaagaaactcggaagactc 663
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 109 aaacatttctgagcatagagaatccttggtcagagcagatttaagaaacttggaagactc 50
Query: 664 agtaatagcaaatgaggagga 684
|||||||||||||||||||||
Sbjct: 49 agtaatagcaaatgaggagga 29
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space: 723876
Effective search space used: 723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no491_j01.g1 MSMg01no491_j01.g1 CHROMAT_FILE:
MSMg01no491_j01.g1 PHD_FILE: MSMg01no491_j01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:31 2005
(569 letters)
>mm_chr13_26182309_26183277
Length = 969
Score = 1046 bits (541), Expect = 0.0
Identities = 562/569 (98%)
Strand = Plus / Plus
Query: 1 actgggactgctggggaaacagctttgcagtactggattgaaggaataatttctagcttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgggactgctggggaaacagctttgcagtactggattgaaggaataatttctagcttg 260
Query: 61 catcctattgtcatcactgacatatcacatgaaaccatcagttctttgttcaccatggga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catcctattgtcatcactgacatatcacatgaaaccatcagttctttgttcaccatggga 320
Query: 121 gctgtgcactataaagttgatttcatttcatccactaaacagtgctgaatttattagctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctgtgcactataaagttgatttcatttcatccactaaacagtgctgaatttattagctc 380
Query: 181 ctcccttcattattttcttaactttagttgcaattgcctccagtggactcactagctatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcccttcattattttcttaactttagttgcaattgcctccagtggactcactagctatc 440
Query: 241 aatcataaaccatttcattattggtgaagaggtgagataggttaacaggggatttgctta 300
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatcataaaccagctcattattggtgaagaggtgagataggttaacaggggatttgctta 500
Query: 301 taaattgagaagagataaatctgcactccctcaagggtagcaatatatttacagattgga 360
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct: 501 taaattgagaagagataaatctggactccctcaagggaagcaatatatttacagattgga 560
Query: 361 ggcagtagccttttccaaaaggcactttatagaaaggtaaagtcttcaagaccttggtgt 420
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 561 ggcagtagccttctccaaaaggcactttataggaaggtaaagtcttcaagaccttggtgt 620
Query: 421 ttatgagctatgaagcttgtgtatctgtagaattgtaaagtatactaataaaataaaatt 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 621 ttatgagctatgaagcttgtgtatctgtagaattgtaaagtatactaataaaatcaaatt 680
Query: 481 ggaactcgccttacatttgactgtgttaccacctggagtacttgtataagtcgtatagtg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggaactcgccttacatttgactgtgttaccacctggagtacttgtataagtcgtatagtg 740
Query: 541 gctctataaagcaactttacagctgaaat 569
|||||||||||||||||||||||||||||
Sbjct: 741 gctctataaagcaactttacagctgaaat 769
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space: 536081
Effective search space used: 536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
