BAC Information

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BAC

Clone NameMSMg01-491O15
Chromosome13 (Build37)
Map Location 22,591,911 - 22,592,623
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4
Downstream geneV1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-491O15.T7 (MSMg01no491_o15.b1)MSMg01-491O15.TJ (MSMg01no491_o15.g1)
ACCAG569797AG569798
length7381,722
length of high quality
(start - end)		700 (36 - 735)---
definitionCHROMAT_FILE: MSMg01no491_o15.b1 PHD_FILE: MSMg01no491_o15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:58 2005CHROMAT_FILE: MSMg01no491_o15.g1 PHD_FILE: MSMg01no491_o15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:59 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCACAC
ACATTATCGACATTGACATGTGATTGTGATTGCTAAAGAAACTCTAATTT
ATGCTGGGCATGCATGTTTTTACCCACTAGCCCTGTGTCTCTGACTCCAG
TCCCTGCATGAAGAGTTCTCAGCAGGCTTGACTCAGTTACCCCAATATAG
AAATGTACAATATGACTTTCTATGTCTTATGATATGACAAAACTGCTATT
TTGGCTTCTGTAACTTGTTTATGCAGAGGCCTAAATATTGTTTTGACTTA
CTTGACCCACTTACACTAGCAGCACAGACCATTATTGCTTGCTTATGTAG
AGACTGAAGGTCTACTTGTGTCTTTTACATGAAAATAAAAACCTTTCGCA
TACCCTTCCCTCAGAACATACTTGAAATTATGCTTTCAGGCTGATATCAT
GTTAACAAGTAATCAATAAATTTTTTAGTTACAGTGGAGACCCCAGATTC
CTGACCGCTGGCCCAGGATAGTTCCCAGAGAGAAGAAGTCCAAAGTGGAC
TTGATAAGTCCCCAGAAACATAAATTACAACTGCCTGAAGTTTGTAAATT
AAAAGCAAAAACAAATGTGTGTCTGAAGCATGGACTGATTTGTGAGTTGT
GTTGTTTTGGAGACCCGACATTTGGTGAGACAAATGCAATATCAGACACA
ATTGTAGATACAGGCTCTGGGACAGAGTTGACACCTAT

GGCTTGGTGGTTNNGTGTGTGGGCCGTTTTCTGCTCCTTCTCCTCCCCCA
GAGCCGGAGCGNCGCGGCTCACACCCGGTGAGTTCCGCTCCCTACAAACC
ANTTTCCTACGCAACCGTGTCTTTCTCTCTCGGTATCTGTCTCCTCAGCG
TGCTCGTGTCGTCGCGCGCAGGCCGCTCTCGCGACGCGCGTTCTCCGCGT
CGCCGGGCTGCCCTCGCGCCAACGCATCTTCATGACCTCATAGTGACTGC
GTCCTCCTCACATTGATGATGTGATTCATTGGTGTTGTCCGCATGAATTA
TTCGAATCTAGTGAGAGTAAAGAATCTTGATCGAGCCTTCAGTCACGTTC
GTGCCTCCCCGCCACTCATGGTGCTGTACGAGTCAGTCACCCACGAACAT
CTACATGCGTACGTAACGTAGTACGATGTCTGGCCGCTGTTGGAGCGATG
AGAGTGCTAAGACGCTGCGGGGTGGGGGTCAACGATGNTAGGCCGTAGCG
ACGCACGCCGACTCCGCCGACCTCACCCTCGACCATATAGACGAGCCTAC
GCACTCCCTTCCCGCCCACACCATCGAAGCGCCACACATATTCTCTCCTG
TCCTAGCCTCCCTTCTCTCCCTCTTCTTACTATCTCACACCTATCATCTC
ATATCTTCACTCAATATTCTATACTCTCTCATTCCTTCGCTACTACACAC
ACGATTAACAGCTCTTCTCGAGACATCTGCCCTCGGCTTGGCGCGTGTGT
GCGATAGTGCTCCTCTGCNCATAGCGTACCTCATTCATACACCTACGCGC
CTGCCGCTCACCAACGCTGCCTCGCTATGAGCTTGTTCGACGTCCTAATA
TACGCTCACGTAATGACTACATATGACACATATGCACGANTCACGACTCT
ATTCACAATGCGATCACATACTGTTAGCGTCGTNGTACTGTCGTCGAGTA
TGACGAGGTCACTTACGTNAGTGATACATCTTCCGGCTTCGCTATCCATC
TNNCCNTCTGCTGCGCNATACGATCTCTCACACGAGTGCATAGATCGNGN
ACCCCNGATNAGTCAGTACCATGTGCTCGCTACATCCGCTTACTGCTCGT
GCGATGCTATTCACCTGTATGTGAATGACTGAGATACGCTGCATCTTCAC
TCAGATANGTGACNTGGCTGCTAANTCGANCTACCTGACTGATACTGCAC
GCGCGTACGTCNATCGTCTGCTCGCGCTNCGNTCACCGACGCTACGCGCG
TGTCGGCTGCNGACTATCGTCTATATCTCTCGCTCGANCGCGTTCGCGAG
CNATCATGACNTGAGTAAGCTGCCTATCGCGTGAATGTCAGCNCGCCAGC
ACTGTCGCGCTCGTCGCGTCGNCNTGAGTTGACAGTATTCAGTGCCTCCT
CGCTCTCTAGTCATTGCTGATCACCTACATCGTCTCATCCCNNTNCGTCA
GCCGANCTACTAGCGNGTCGACTACTATATCNTCCATNCGACATCACACG
TCTCGGTATGGCTCTCTCCTNCTGACGCNACCANTAGCATCCTCCTCATA
TTTAGACTCAGCACGCGGTGCTCTATNGTAGGTCGCGTGCCGCTCGTCCA
GTCGACACTAGACGCCTCNGACGACACGATCCAACATCGTCGCTGCATGA
CCCGTGTACTACGNCTGGCANCATGACTCGATCATCTNGCTGTGTACGNA
CGACTCTCGTACAGGACNGCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no491_o15.b1 MSMg01no491_o15.b1 CHROMAT_FILE:
MSMg01no491_o15.b1 PHD_FILE: MSMg01no491_o15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:58 2005
         (700 letters)



>mm_chr13_22591748_22592847
          Length = 1100

 Score =  596 bits (308), Expect = e-174
 Identities = 609/732 (83%), Gaps = 55/732 (7%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccacacacattatcgacattgacatgtgattgtgattgctaaagaaac-tctaat 63
           |||||||||||||||||  |||||||||||||||||| |||||||||||| || | || |
Sbjct: 876 gaattccacacacattaaagacattgacatgtgattgagattgctaaagagacat-tact 818

                                                                       
Query: 64  ttatgctgggcatgcatgtttttacccactagccctgtgtctctgactccagtccctgca 123
           ||| |||||| || |||| ||||||| | |||||       | ||||||| ||||||| |
Sbjct: 817 ttaggctgggaatccatgattttaccaattagcc------atatgactcctgtccctgaa 764

                                                                       
Query: 124 tga-agagttctcagcaggcttgactcagttaccccaatatagaaatgtacaatatgact 182
           ||| | |||||||||| ||||||||||||| ||||||| | |||||||||||| ||||||
Sbjct: 763 tgata-agttctcagctggcttgactcagtcaccccaacacagaaatgtacaacatgact 705

                                                                       
Query: 183 ttctatgtcttatgatatgacaaaactgctattttggcttctgtaacttgtttatgcaga 242
           ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 704 ttctacgtcttatgatatgactaaactgctattttggcttctgtaacttgtttatgcaga 645

                                                                       
Query: 243 ggcctaaatattgttttgacttacttgacccacttacactagcagcacagaccattattg 302
           | |||||||  |||||||| |||||| |||||||||||||||||||||| ||||||||||
Sbjct: 644 gacctaaatcctgttttgagttactttacccacttacactagcagcacaaaccattattg 585

                                                                       
Query: 303 cttgcttatgtagagactgaaggtctacttgtgtcttttacatgaaaataaaaacctttc 362
           ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 584 cttgcttatgtagagactgaaagtctacttgtgttttttacatgaaaataaaaacctttc 525

                                                                       
Query: 363 gcatacccttccctcagaacatac--ttgaaattatgcttt-caggctgatatcatgtta 419
            |||||||||||||||| |  |||  |||| || ||||||| ||||||||||||||||||
Sbjct: 524 ccatacccttccctcagga--tacgcttgatatcatgcttttcaggctgatatcatgtta 467

                                                                       
Query: 420 acaagtaatcaataaattttttagttacagtggagaccccagattcctgaccgctggc-- 477
            |||||||||||||||| ||||| ||||||| ||||  |||||||| ||    ||||   
Sbjct: 466 tcaagtaatcaataaatcttttaattacagttgagatgccagattcatg----ctgggtg 411

                                                                       
Query: 478 --ccaggatagttcccagaga--g-aagaagtccaaagtggacttgataagtccccagaa 532
             ||||||||| |||||||||  | ||||   |||| |||||||||||||||||||||||
Sbjct: 410 atccaggatagatcccagagacagcaaga---ccaaggtggacttgataagtccccagaa 354

                                                                       
Query: 533 acataaattacaactgcctgaag-tttgtaaattaaaagcaaaaacaaa---------tg 582
           ||||  | ||||||||| | ||  ||| |||||| ||||||||| ||||         ||
Sbjct: 353 acatggactacaactgc-tcaaaatttataaattgaaagcaaaa-caaaactaagaattg 296

                                                                       
Query: 583 --------tgtg--tctgaagcatggactgatttgtgagttgt-gt---tgttttggaga 628
                   ||||  |||||||||||| ||||||| |||||||| ||   ||||||  || 
Sbjct: 295 cccaccaatgtgcttctgaagcatgggctgatttttgagttgttgtgtgtgttttaaagt 236

                                                                       
Query: 629 cccgacatttggtgagacaaatgcaatatcagacacaattgtagatacaggctctgggac 688
           |  ||||||||| | |||||||| |||| |||||||||| |||||  ||  |||||||| 
Sbjct: 235 ctggacatttggagtgacaaatgaaataccagacacaatagtagacccaatctctgggag 176

                       
Query: 689 agagttgacacc 700
           ||||||||||||
Sbjct: 175 agagttgacacc 164


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 700
Length of database: 1100
Length adjustment: 10
Effective length of query: 690
Effective length of database: 1090
Effective search space:   752100
Effective search space used:   752100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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