BAC Information

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BAC

Clone NameMSMg01-492C15
Chromosome13 (Build37)
Map Location 40,375,544 - 40,516,041
singlet/doubletdoublet
Overlap geneOfcc1
Upstream geneEG666867, LOC100041779, LOC382747, A230103O09Rik
Downstream geneLOC666894, LOC100039048, Tcfap2a, EG621629, EG637157, LOC100039105, Gcnt2, Pak1ip1, Tmem14c, Mak, EG621771, Gcm2, LOC637277, Elovl2, LOC268650, BC024659, Nedd9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492C15.T7 (MSMg01no492_c15.b1)MSMg01-492C15.TJ (MSMg01no492_c15.g1)
ACCAG569985AG569986
length724710
length of high quality
(start - end)
554 (72 - 625)145 (311 - 455)
definitionCHROMAT_FILE: MSMg01no492_c15.b1 PHD_FILE: MSMg01no492_c15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:19 2005CHROMAT_FILE: MSMg01no492_c15.g1 PHD_FILE: MSMg01no492_c15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,375,544 - 40,376,095)(40,515,897 - 40,516,041)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTCTTTCACATCCTTCACCCACAAAGCTGTGTGTGACCTGTACCC
AGTGGGTGCACAGATCCTCAGCTGCATCACCCCCAACCCTAGCCCCAAAC
AAATCTTCCACAGAAGCTGTACAGGCACGCTTGAGTGGAATGCCAGGTTC
CCGTTCAGGACACCCAGGTCGGATGAGAAGAGCAGCAAGTGTGAGCACAA
TCAGGACTGAAGTCACACCTTTGGGTCCCGCTGAAGCTGGCAGCCTGGAT
TTTTGTTGATGATTTTTAAGGGTGTGATCCAGCATGTCATGTCTCACAAC
ATTCTCTTGTGGAGTCTGATGTGCTGGGAGTTCTGGGCTGCTCATGTTAA
AACCTGGATTCCCGGCACCTTCAGTAGCGTCCGTGTATTCTTTAACTAGA
GCAAAACAAGGAGGTCAGAAGATCACACAATAGGCTGTTGGATTCCAGGG
CTAAGCAGAAAATTTACTCTCAGTAATTCTTGTGCAGAAAGACTCAAGTG
TATCGTCCTCAAATGTCACCAAAACAGAATTAGGTTAAAATTAACTCTTA
AAAAAAAAAGAATAAATGATTAANATAATTACAAATTGCACCCTGACAAG
CTAGAGCAAAATTTCGCCCTCAGCCATTTGTCTGTAATTAGTTAATTAAT
CCTTACACAAATTATGAGCAATAG
CTGTGGTAGGCTGGGGGCGCCTGGCTTCAACAAATAGGTGACCTATAGAA
TTTTCCCGAGAATCGTGTGTTAGCTCGCTCAGTTCATGTTTATCTAATGT
GTAGCACATTTTTGGATTTCATATATTTGGATGCTTTGGATTTGGAGGAA
AAAAAGAGAAAATATTTTGGTGACTTTTATATCTCTTCCTTCATTTTCTG
TTTCTTTTAAAAACAGCACGTTTTTATATTGCATAATACACTTTAAAGCC
AGGAATCGTTTACATCAGAGTCAGCATAGCGATGGATCATTAGAAATGCA
TTGTTTTGGTCTCACCGAAGACCCATCAAAACATCTCTTCCATCTCTCAG
ACCTTGGAGTCTGGATATTTGACCAGCTCCCTGGGTGATTCTTACATCCA
AGAGCAGCTTTTATAAAATATGGTTTAAAAAATAGTAGGAAAATGACCAG
AATCTTGGTGGCCATCTTATTCCCATGGGATCTCCTGTTTCCTTTAAAAT
AATTGAAAAAGGCTTTCTAATGAAAAATTTCCACGGGCTGTGGAGACGGC
TCATGAGATAAAGGCACTCGTTGAAAGCCAGAGAATGGAAGTTTCATCCC
TGAGACCTACACTGTTGGTGGAAAGCGAGAACTGACTCCTACAGTTTTTC
TCTGACCCCCTCAATAAATAAGATATTTATAAAAATCCATTGATATCATA
ACTTTCTAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_c15.b1 MSMg01no492_c15.b1 CHROMAT_FILE:
MSMg01no492_c15.b1 PHD_FILE: MSMg01no492_c15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:19 2005
         (554 letters)



>mm_chr13_40375344_40376297
          Length = 954

 Score = 1021 bits (528), Expect = 0.0
 Identities = 546/552 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acccacaaagctgtgtgtgacctgtacccagtgggtgcacagatcctcagctgcatcacc 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acccacgaagctgtgtgtgacctgtacccagtgggtgcacagatcctcagctgcatcacc 260

                                                                       
Query: 61  cccaaccctagccccaaacaaatcttccacagaagctgtacaggcacgcttgagtggaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccaaccctagccccaaacaaatcttccacagaagctgtacaggcacgcttgagtggaat 320

                                                                       
Query: 121 gccaggttcccgttcaggacacccaggtcggatgagaagagcagcaagtgtgagcacaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccaggttcccgttcaggacacccaggtcggatgagaagagcagcaagtgtgagcacaat 380

                                                                       
Query: 181 caggactgaagtcacacctttgggtcccgctgaagctggcagcctggatttttgttgatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caggactgaagtcacacctttgggtcccgctgaagctggcagcctggatttttgttgatg 440

                                                                       
Query: 241 atttttaagggtgtgatccagcatgtcatgtctcacaacattctcttgtggagtctgatg 300
           | ||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 agttgcaagggtgtgatccagcatgtcatgtctcacaactttctcttgtggagtctgatg 500

                                                                       
Query: 301 tgctgggagttctgggctgctcatgttaaaacctggattcccggcaccttcagtagcgtc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 501 tgctgggagttctgggctgctcatgttaaaacctggattcccggcaccttcggtagcgtc 560

                                                                       
Query: 361 cgtgtattctttaactagagcaaaacaaggaggtcagaagatcacacaataggctgttgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cgtgtattctttaactagagcaaaacaaggaggtcagaagatcacacaataggctgttgg 620

                                                                       
Query: 421 attccagggctaagcagaaaatttactctcagtaattcttgtgcagaaagactcaagtgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attccagggctaagcagaaaatttactctcagtaattcttgtgcagaaagactcaagtgt 680

                                                                       
Query: 481 atcgtcctcaaatgtcaccaaaacagaattaggttaaaattaactcttaaaaaaaaaaga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atcgtcctcaaatgtcaccaaaacagaattaggttaaaattaactcttaaaaaaaaaaga 740

                       
Query: 541 ataaatgattaa 552
           ||||||||||||
Sbjct: 741 ataaatgattaa 752


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space:   513536
Effective search space used:   513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no492_c15.g1 MSMg01no492_c15.g1 CHROMAT_FILE:
MSMg01no492_c15.g1 PHD_FILE: MSMg01no492_c15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:19 2005
         (145 letters)



>mm_chr13_40515697_40516241
          Length = 545

 Score =  257 bits (133), Expect = 2e-73
 Identities = 142/145 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcaccgaagacccatcaaaacatctcttccatctctcagaccttggagtctggatattt 60
           ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 345 ctcaccgaagacccatcaagacatctcttccgtctctcagaccttggagtctggatattt 286

                                                                       
Query: 61  gaccagctccctgggtgattcttacatccaagagcagcttttataaaatatggtttaaaa 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 285 gaccagctccctgggtgattcttacatccgagagcagcttttataaaatatggtttaaaa 226

                                    
Query: 121 aatagtaggaaaatgaccagaatct 145
           |||||||||||||||||||||||||
Sbjct: 225 aatagtaggaaaatgaccagaatct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 145
Length of database: 545
Length adjustment: 8
Effective length of query: 137
Effective length of database: 537
Effective search space:    73569
Effective search space used:    73569
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)