BAC Information

Click to search

BAC

Clone NameMSMg01-492D03
Chromosome13 (Build37)
Map Location 26,698,802 - 26,699,444
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666221, LOC100042180
Downstream geneLOC100042191, Hdgfl1, LOC100040939, LOC100040945, LOC100040957, Prl, Prl3d1, Prl3d2, Prl3d3, Prl3c1, Prl3b1, Prl3a1, Prl6a1, Prl8a2, Prl2b1, Prl8a6, Prl8a8, Prl8a9, Prl8a1, Prl7b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492D03.T7 (MSMg01no492_d03.b1)MSMg01-492D03.TJ (MSMg01no492_d03.g1)
ACCAG570009AG570010
length605733
length of high quality
(start - end)
172 (81 - 252)637 (72 - 708)
definitionCHROMAT_FILE: MSMg01no492_d03.b1 PHD_FILE: MSMg01no492_d03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:21 2005CHROMAT_FILE: MSMg01no492_d03.g1 PHD_FILE: MSMg01no492_d03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAATTGGGCGCTAAACATCCATTTCAGAGGATCCGGGAATTCTCCCTTAT
ACAGAAAGCCAGAAATCCTAGAGAGTCTATAACCTTAAAGAACACAAATG
CCAGCCCAGGCAAAACTCTCAATTACCATAAATGGAAAAACCAAGGTATT
CCATGACAAAACCAATTTTACACAATATCTTTCCACAAATCCAGCCCTTC
AAAGGATAATAAAAGGAAAACTCTAACACAAGGGAAGGGAAACTTTGCCC
TAAAAAGCAAGNAGTNAATCCTTTCACAAACCTAAAAAAAAATTTTTTTT
TAAAACAAATTCCCCTCTTCCCCCAAAAAAAAAGGGGGCCGTTTCTTTTT
TCCCCAAGGGGGGTTTAAAAAACACCGGGGGGNGTTAGTCTCCCCTAAAA
AAAAGAATAATAAAAGGGGGGTTGTAAANGAGGCCCCCCCCCTTGTTGTT
CTCTTCNNNGGGNNNNNNNNNNAAAACAGANAAGAGAAGNNNNNNGAGNC
NCAAAAAAAAAAGGGGGGGGGACGCNNTTTATTCCCAGGGGGGNAGGGGN
NCCCNAAAAAAAAAAAAGGGGGGGGGGGTTTAATCTTACTTTTTGTGGGG
AANAA
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATTACATTCAGTGAAATCATGTGTATCTG
GCTTATAAAACTTATTATCCAAGGCATAATTAATCAAGCATATCAAATTA
GCTCATGAGTATTTGCTGAGCTTGTACAGCACAGGAGGGTCTGATTTCAA
TGTTAAATCATACTGTGTGTTTGGAACACTCAATGTGGATGATTCTAGAT
CAGATTTCTAGGAAGAAAGTAAATTGCTTTGATAGTTAATGCATAAATGA
ACTTGTGTGTTAGGTATTGTGTCCATTTGAGGGTAGATAACTATTGACCA
TTGATATATCTGATCAGAATATCCCTAGTGTTTGTATGATACCCAGAAAT
ATATGGATGGTATGGTTTATCATTCATTTCAAATACAAGTTAACACAGGG
AACAACTTTTTATGTTGCATTCTAGTTATTTCAAAATTCTTGAATTTGTG
ATCTATTATCTGTATTGTAAAAACTAATTTTCAAAAGATGTGATCAGACA
AGCTAAGTTACAGTGAGAGTTAATATTGATTGTCAACCTGACAGGATCTA
GAATTTCTCTAAAAGCCAAAACTCTGGATATGTTTGTGAAGGAGTTTCAA
GATTGAGTTACTTCATGTGGGAGGTCTTATTTTATATATAGGTAGGAATA
CCTCAAGAGCAGGGCTCTACTAATTAAAGGAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_d03.g1 MSMg01no492_d03.g1 CHROMAT_FILE:
MSMg01no492_d03.g1 PHD_FILE: MSMg01no492_d03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:21 2005
         (637 letters)



>mm_chr13_26698749_26699791
          Length = 1043

 Score = 1116 bits (577), Expect = 0.0
 Identities = 625/643 (97%), Gaps = 6/643 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attacattcagtgaaatcatgtgtatctggcttataaaacttattatccaaggcataatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 attacattcagtgaaatcatgtgtatctggcttataaaacttattatccaaggcataatt 637

                                                                       
Query: 61  aatcaagcatatcaaattagctcatgagtatttgctgagcttgtacagcacaggagggtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 aatcaagcatatcaaattagctcatgagtatttgctgagcttgtacagcacaggagggtc 577

                                                                       
Query: 121 tgatttcaatgttaaatcatactgtgtgtttggaacactcaatgtggatgattctagatc 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 tgatttcgatgttaaatcatactgtgtgtttggaacactcaatgtggatgattctagatc 517

                                                                       
Query: 181 agatttctaggaagaaagtaaattgctttgatagttaatgcataaatgaacttgtgtgtt 240
           |||||||||||||||||||||||||||||||||||||| |||||||||  ||||||||||
Sbjct: 516 agatttctaggaagaaagtaaattgctttgatagttaacgcataaatgtgcttgtgtgtt 457

                                                                       
Query: 241 aggtattgtgtccatttgagggtagataactattgaccattgatatatctgatcaga-at 299
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 456 aggtattgtgtccatttgagggtagataactattggccattgatatatctgatcagacat 397

                                                                       
Query: 300 atccctagtgtttgtatgatacccagaaatatatggatggtatggtttat----cattca 355
           ||||||||||||||||| ||||||||||||||||||||||||||||||||    ||||||
Sbjct: 396 atccctagtgtttgtattatacccagaaatatatggatggtatggtttatttatcattca 337

                                                                       
Query: 356 tttcaaatacaagttaacacagggaa-caactttttatgttgcattctagttatttcaaa 414
           |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 336 tttcgaatacaagttaacacagggaatcaactttttatgttgcattctagttatttcaaa 277

                                                                       
Query: 415 attcttgaatttgtgatctattatctgtattgtaaaaactaattttcaaaagatgtgatc 474
           |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 276 attcttgaatttgtaatctactatctgtattgtaaaaactaattttcaaaagatgtgatc 217

                                                                       
Query: 475 agacaagctaagttacagtgagagttaatattgattgtcaacctgacaggatctagaatt 534
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 agacaagctaagttactgtgagagttaatattgattgtcaacctgacaggatctagaatt 157

                                                                       
Query: 535 tctctaaaagccaaaactctggatatgtttgtgaaggagtttcaagattgagttacttca 594
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 156 tctctaaaagccaaaactctggatatgtttgtgatggagtttcaagattgagttacttca 97

                                                      
Query: 595 tgtgggaggtcttattttatatataggtaggaatacctcaaga 637
           ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 96  tgtgggaggtcttattttagatataggtaggaatacctcaaga 54


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1043
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1033
Effective search space:   647691
Effective search space used:   647691
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)