BAC Information

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BAC

Clone NameMSMg01-492M13
Chromosome13 (Build37)
Map Location 117,511,632 - 117,688,660
singlet/doubletdoublet
Overlap geneLOC100041169, Parp8
Upstream geneEG623174, Isl1, EG668276, Gm280
Downstream geneLOC668288, LOC623312, Emb, EG623365, LOC382807, Hcn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492M13.T7 (MSMg01no492_m13.b1)MSMg01-492M13.TJ (MSMg01no492_m13.g1)
ACCAG570457AG570458
length711737
length of high quality
(start - end)
188 (119 - 306)237 (73 - 309)
definitionCHROMAT_FILE: MSMg01no492_m13.b1 PHD_FILE: MSMg01no492_m13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:06 2005CHROMAT_FILE: MSMg01no492_m13.g1 PHD_FILE: MSMg01no492_m13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,688,473 - 117,688,660)(117,511,632 - 117,511,866)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXNATGCGAGAAGATGGGCGGAA
TTCNNGAATTACCATAATAACGTTCCAGNCCATAAACTTGATTTACTAAG
AGCCCATTAGATCTGGTGCACTAATGCAGTGGCTTAGATCCTTGATCAGG
ATGCAGCCCACGTCTTTCTCCTTCAGTTTAATGAATTTTCATTTTCATCC
TATGCCAGCAGTTATTGAGTAATGTTCTAAAGGAAAACACTTTTAAAAGT
CCCTGTGCCCGCTTCCTTTTCTCTGGTGCCGGAAGTCTTCTGTGATGTCT
GGCCCTGTTTAATCTTAGGCCTCTAGGATTGTCATCAGCTTTTATGACAC
TATACCAAGGCATCCTTGTGGAGATATGAATTATGCATGGCTGTATTTGA
AAGAGGAGGAAACTTCTCTTTTAGTGGCTCAGATGTTGAGTCTAGATGCT
CACACAAATGTAGAGTCAAATAATTAACTCTTAACACGTGGGATTCTGTG
TCTCTAAAGCTAAATTTAATTTACAAGGGGTGTTTAGTATAATATAGTAT
GCAATTTTCTCTTTCAAAGACTCATGGGATATCTTTACATCTCTGTGCTG
GAATTAGTGAGGCTTCTCCAGGGCAATGGGTGTCTCCTTTCAGATGGACT
TTATTTCTTACATGAGTCTCCCCCACCCCCGGCTTACTCATCCTGTAGAG
GATCTTGTGGT
TGAATGGGGGAGGCCTGGGGGCCGCCTGGCTGCAAAATATAGGTGAACTA
TAGAATTTTCAACAAAAATCGCCGCTTTATTTTCAGGCACCAAACAACTG
GAAAGACATAGGTATAAATTTGAAAGATGATTTCTTCTTCAGAAGCAGTA
ACTTCTTCATTATGATAATTGCCGTGATAATCTGCTTTCATCAACTGAGC
CCTTACTATATAAGGCATCTTTTCTTTAACTGCAGAGACTATTTCATTAA
GCAACAAACTCGGAGTGAATTAACAGAATACCCAATCTTCTACATCAAAA
TACTGAATTTTTTTCATAGTGCAACCCTCATGATAGGAACTATTTTTGGA
ATTAAATATGAACGGGTCACCCAGACCTAAGCAACGGTAACTTTAAATGG
ACATAATTATGAAAATGACAGTTACATTAGAGTATGGTAAAATCCAAGAA
ATGCTACCGATTTATATAACATATAATAAGAACTCAGGACTCGTGCACTT
AGTGAGCTACAGTGATTGTCACATAATGGGCTATCTCGAGTCTATCAGGT
GAAAGAGCCTTTGAGAGAAAATGCTTTCTGATTCGCCAACCTATAAAAAG
AAGGCCCGGGATCCGTTGTCACGTATTGCTTGATGTGTTACGTTTTCCTG
TGACGATCCTCACTCTCATCCCCTGTCCTATATTTTGGGGAATGAAAACT
CTTTTCTATAGGATGTGCTTTCAATTTCGTGGGGGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_m13.b1 MSMg01no492_m13.b1 CHROMAT_FILE:
MSMg01no492_m13.b1 PHD_FILE: MSMg01no492_m13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:06 2005
         (188 letters)



>mm_chr13_117688273_117688860
          Length = 588

 Score =  364 bits (188), Expect = e-105
 Identities = 188/188 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactaatgcagtggcttagatccttgatcaggatgcagcccacgtctttctccttcagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 cactaatgcagtggcttagatccttgatcaggatgcagcccacgtctttctccttcagtt 329

                                                                       
Query: 61  taatgaattttcattttcatcctatgccagcagttattgagtaatgttctaaaggaaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 taatgaattttcattttcatcctatgccagcagttattgagtaatgttctaaaggaaaac 269

                                                                       
Query: 121 acttttaaaagtccctgtgcccgcttccttttctctggtgccggaagtcttctgtgatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 acttttaaaagtccctgtgcccgcttccttttctctggtgccggaagtcttctgtgatgt 209

                   
Query: 181 ctggccct 188
           ||||||||
Sbjct: 208 ctggccct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 188
Length of database: 588
Length adjustment: 8
Effective length of query: 180
Effective length of database: 580
Effective search space:   104400
Effective search space used:   104400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no492_m13.g1 MSMg01no492_m13.g1 CHROMAT_FILE:
MSMg01no492_m13.g1 PHD_FILE: MSMg01no492_m13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:06 2005
         (237 letters)



>mm_chr13_117511432_117512068
          Length = 637

 Score =  439 bits (227), Expect = e-128
 Identities = 233/235 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgctttattttcaggcaccaaacaactggaaagacataggtataaatttgaaagatgatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cgctttattttcaggcaccaaacaactggaaagacataggtataaatttgaaagatgatt 260

                                                                       
Query: 61  tcttcttcagaagcagtaacttcttcattatgataattgccgtgataatctgctttcatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttcttcagaagcagtaacttcttcattatgataattgccgtgataatctgctttcatc 320

                                                                       
Query: 121 aactgagcccttactatataaggcatcttttctttaactgcagagactatttcattaagc 180
           |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 321 aactgagcccttactatataaggcattttttctttaactgcagagacaatttcattaagc 380

                                                                  
Query: 181 aacaaactcggagtgaattaacagaatacccaatcttctacatcaaaatactgaa 235
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacaaactcggagtgaattaacagaatacccaatcttctacatcaaaatactgaa 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)