Query= MSMg01no492_n23.b1 MSMg01no492_n23.b1 CHROMAT_FILE:
MSMg01no492_n23.b1 PHD_FILE: MSMg01no492_n23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:13 2005
(608 letters)
>mm_chr13_24386379_24387386
Length = 1008
Score = 975 bits (504), Expect = 0.0
Identities = 568/610 (93%), Gaps = 37/610 (6%)
Strand = Plus / Plus
Query: 1 ttctagcacttcc--aggctaaagcaatagaatcactcagttcaaggccagcctaggcta 58
||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 ttctagcac-tccaaaggctaaagcaatagaatcactcagttcaaggccagcctaggcta 292
Query: 59 catgagatcctatcaaaacaaaaatgaaaggaaacatacacacacacacacacacacaca 118
||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 293 catgagatcctatcaaaacaaaaatgaaaggaa--------acacacacacacacacaca 344
Query: 119 cagagagagagagagagagagagagagagagagagacagagagagagagagacagagaga 178
| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 345 c------------agagagagagagagagagagagac--------agagagacagagaga 384
Query: 179 gacagagagagacagagagagacagagagagagagagacagagacagagagggagaggca 238
||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||
Sbjct: 385 gacagagagagacagag------agagagagacagagacagagacagagagagagaggca 438
Query: 239 tgcaaccttcaggttcagcctagtgttgtttcagtgtatatgattatatgatttcaggtc 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tgcaaccttcaggttcagcctagtgttgtttcagtgtatatgattatatgatttcaggtc 498
Query: 299 tgacaaccggatgctgtgcaaccaatttgggagctcatgcgtgagggagactaactctcc 358
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 499 tgacaaccggatgctgtgcaaccaattagggagctcatgcgtgagggagactaactctcc 558
Query: 359 tctccgcagtctttaaatgcctggagctctttctttgtctagggatggagtcccattaga 418
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tctccgcagtctttagatgcctggagctctttctttgtctagggatggagtcccattaga 618
Query: 419 tttccctcacccactttagcatgtcccttggtgtcattgcttaggtctttagacagccat 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tttccctcacccactttagcatgtcccttggtgtcattgcttaggtctttagacagccat 678
Query: 479 agtgttaatgtatcctaagtggtgggataccaatgaagaccgctcaactggctaagccaa 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 agtgttaatgtatcctaagtggtgggataccaatgaagaccgctcaactggctaagccaa 738
Query: 539 tgcaaagtgtttattagctggccagaggctatactgatgaggatcccagtgtggcactga 598
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 739 tgcaaagtgtttattagctggccagaggctatactgttgaggatcccagtgtggcactga 798
Query: 599 accttaagca 608
||||||||||
Sbjct: 799 accttaagca 808
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 113
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space: 596804
Effective search space used: 596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no492_n23.g1 MSMg01no492_n23.g1 CHROMAT_FILE:
MSMg01no492_n23.g1 PHD_FILE: MSMg01no492_n23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:13 2005
(617 letters)
>mm_chr13_24529159_24530175
Length = 1017
Score = 828 bits (428), Expect = 0.0
Identities = 450/462 (97%), Gaps = 8/462 (1%)
Strand = Plus / Minus
Query: 156 aataaatactaaattatatatatatatatatatatatatatatatatatataatgtattg 215
|||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1017 aataaatactaaat--------tatatatatatatatatatatatatatataatgtattg 966
Query: 216 aagaattatttttaaatcaatttgcttatattttatcatcagtaaaaacttgattttcat 275
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 965 aagaattattttaaaatcaatttgcttatattttatcatcagtaaaaacttgattttcat 906
Query: 276 accaattttatgaatttatatgcccagggttgcataaaagtttctctgatgccaatggat 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905 accaattttatgaatttatatgcccagggttgcataaaagtttctctgatgccaatggat 846
Query: 336 cacaaacagaaaagttttataaatcttgctctacttgaaagggacttgttcagatgaaaa 395
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 845 cacaaacagaaaagttttataaatcttgctctacttgaaagggacttattcagatgaaaa 786
Query: 396 tgaaatggagaaacaagtaagacagagtggactaatctgattatgttgatggagatgtgt 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 tgaaatggagaaacaagtaagacagagtggactaatctgattatgttgatggagatgtgt 726
Query: 456 cctcagctttagttagcaaattttgattatttaccaagcgatcagacacaggttccaagc 515
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 725 cctcagctttagttagcaaattttgattatttaccaagagatcagacacaggttccaagc 666
Query: 516 tcgcttcatgcttattatacttttggggactctagttgaattcagggctcagtgtggata 575
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 665 tcgcttcatgcttattatacttttggggactctagctgaattcagggctcagtgtggata 606
Query: 576 gccttcctttataggcaagctcattctctatgctctgtaact 617
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gccttcctttataggcaagctcattctctatgctctgtaact 564
Score = 62.6 bits (32), Expect = 9e-14
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 168 attatatatatatatatatatatatatatata 199
||||||||||||||||||||||||||||||||
Sbjct: 972 attatatatatatatatatatatatatatata 1003
Score = 62.6 bits (32), Expect = 9e-14
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 178 tatatatatatatatatatatatatatataat 209
||||||||||||||||||||||||||||||||
Sbjct: 974 tatatatatatatatatatatatatatataat 1005
Score = 58.7 bits (30), Expect = 1e-12
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 172 tatatatatatatatatatatatatatata 201
||||||||||||||||||||||||||||||
Sbjct: 974 tatatatatatatatatatatatatatata 1003
Score = 58.7 bits (30), Expect = 1e-12
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 174 tatatatatatatatatatatatatatata 203
||||||||||||||||||||||||||||||
Sbjct: 974 tatatatatatatatatatatatatatata 1003
Score = 58.7 bits (30), Expect = 1e-12
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 176 tatatatatatatatatatatatatatata 205
||||||||||||||||||||||||||||||
Sbjct: 974 tatatatatatatatatatatatatatata 1003
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 6
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space: 611249
Effective search space used: 611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
