BAC Information

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BAC

Clone NameMSMg01-493F18
Chromosome13 (Build37)
Map Location 107,745,400 - 107,895,214
singlet/doubletdoublet
Overlap geneDimt1, Kif2a, LOC100040322
Upstream geneOlfr717-ps1, LOC631097, EG620949, Ipo11
Downstream geneLOC100040350, LOC100040366, Apoo, AI197445, LOC100040820, Zswim6, 3021401N23Rik, 2810008M24Rik, Ndufa12l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-493F18.T7 (MSMg01no493_f18.b1)MSMg01-493F18.TJ (MSMg01no493_f18.g1)
ACCAG570897AG570898
length736746
length of high quality
(start - end)		588 (51 - 638)524 (81 - 604)
definitionCHROMAT_FILE: MSMg01no493_f18.b1 PHD_FILE: MSMg01no493_f18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:51 2005CHROMAT_FILE: MSMg01no493_f18.g1 PHD_FILE: MSMg01no493_f18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,894,601 - 107,895,214)(107,745,400 - 107,745,923)
sequence
NNCCTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTACCTATCAATTCAAAAATCTGGGTTCTGGCCTCAGAAC
TGAACACAGACATTTCCCATGTTGTGGGGGTTTGAGAGAAGGCTCAGCAA
TTACCAGCACTTGCTGCTCTTTTGGAGGACCCAATTTCACCCACACCTGT
GGTTCACAATACTGGTGATCCCAGTACCAGGAGAACTGACAGCCTTTTCT
GGCTTCAAGGGTACCTGCATTCACACGGTACACATACAGAGAAGCAGGCA
CACGCATACACATGAGATAAAATAACCGTTGCTTTTAATATTTTACTAGC
ACAGATGAGTGTCATGTCTATTGCTCATTGACTGAATGGAGAGCTCACAT
AGAGTGATCTACTGTTCCTGTAAGAATGTCCTACAATGTTTGCACATGTC
TGTGCAGAGAGAGAGAGAGAGAGAGCACTGTCTGCTCTTCCTGCTTTGAA
TCCCAGCATCCATGTTGGTTAACAAACATCTGTATCTCCAGCCCCAGAAG
ACCTGGCACTTTCTGTTGGCCTATAAAAGCACTTCATGCATATAATACCC
TGACATACATGTACACAACACACCCATACAAAAGAAAAAAAGAAAAAAAA
AAGGAAAAATTGTCCAGCCACGGAGTTTTCAGAAAGTGTCCCCTCATTNA
ATAGCACACAAATGTGTGTGGATGTATTTCTGGGAA

NNNCCGATTACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATGAACCCTGTCCTCTTTA
AAGTTTATATTTAGCCCTAATAAGAGTTGTGTTCATTTGACTTGTAATTT
CCTCAAATATATACATTGTTTTCTTGGCTTAAATGTCTGTAATTTGCCAC
CTGTCTTAGGTTTCTTGTTTTTTGTTTTGTTTTGTTTTTGGAGACAGGGT
TTCTTCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTGGAACTCAG
AAATCCGCCTGCCTCTGCCTCCCAAGTGCGCCACCACAGCCCAGCCTGTC
TTAGGGTTTTATTGCTGTGAAGAGAAACCACAACCAAGTCAAACCTTTAA
TAATGTTTAATCTTTAATGTCTGATAAAGGCAAACGTTTAGTTGGGGCTG
CCTTGGTTTCAGAGGTTCAGTCCATTATCATGGTGGAAAGCATGGCAGCA
TCCAGGCAGACCTGGTACTGGAGGATCCCGGAGCTCTGCATTATGATCAG
GCAGCAGAAGAGAACTGTCTGTCTTCTTTGCAGGCATCCAGGACGCTCTG
ATTCCACACTGGGTGGAGTTTGAGCACTANGAGACCTCAGAAACCACCCC
CACAGTGACACACTTTCCTCCACAATGCCGCATCTCCTAACTTCCCATGG
GCCAAGCATTCAAACACATGAATATATGGGGGCCCAAAACCTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no493_f18.b1 MSMg01no493_f18.b1 CHROMAT_FILE:
MSMg01no493_f18.b1 PHD_FILE: MSMg01no493_f18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:51 2005
         (588 letters)



>mm_chr13_107894337_107895324
          Length = 988

 Score =  949 bits (491), Expect = 0.0
 Identities = 570/617 (92%), Gaps = 35/617 (5%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttacct---atcaattcaaaaatctgggttctggcctcagaactgaacacaga 60
           |||||||||||||   ||  ||||||||| |||||||||||||||| |||||||||||||
Sbjct: 878 ggaattcttacctagaat--attcaaaaacctgggttctggcctcaaaactgaacacaga 821

                                                                       
Query: 61  catttcccatgttgtgggggtttgagagaaggctcagcaattaccagcacttgctgctct 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 820 catttcccatgttgtgggggtttgagagagggctcagcaattaccagcacttgctgctct 761

                                                                       
Query: 121 tttggaggacccaatttcacccacacctgtggttcacaatactggtgatcccagtaccag 180
           |||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 760 tttggaggacccaggttcacccacaccagtggttcacaatactggtgatcccagtaccag 701

                                                                       
Query: 181 gagaactgacagccttttctggcttcaagggtacctgcattcacacggtacacatacaga 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 700 gagaactgacagccttttctggcttcaagggtacctgcattcacacagtacacatacaga 641

                                                                       
Query: 241 gaagcaggcacacgcatacacatgagataaaataaccgttgcttttaatattttactagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 gaagcaggcacacgcatacacatgagataaaataaccgttgcttttaatattttactagc 581

                                                                       
Query: 301 acagatgagtgtcatgtctattgctcattgactgaatggagagctcacatagagtgatct 360
           ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 580 acagatgagtgtcatgtctatcgcttattgactgaatggagagctcacatagagtgatct 521

                                                                       
Query: 361 actgttcctgtaagaatgtcctacaatgtttgcacatgtctgtgcagagagagagagaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 actgttcctgtaagaatgtcctacaatgtttgcacatgtctgtgcagagagagagagaga 461

                                                                       
Query: 421 gagagca-----------------------------ctgtctgctcttcctgctttgaat 451
           ||||| |                             ||||||||||||||||||||||||
Sbjct: 460 gagag-agagagagagagagagagagagagagagagctgtctgctcttcctgctttgaat 402

                                                                       
Query: 452 cccagcatccatgttggttaacaaacatctgtatctccagccccagaagacctggcactt 511
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 401 cccagcatccatgttggttaacaaccatctgtatctccagccccagaagacctggcactt 342

                                                                       
Query: 512 tctgttggcctataaaagcacttcatgcatataataccctgacatacatgtacacaacac 571
           |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 341 tctgttggcccataaaagcacttcatgcatatagtaccctgacatacatgtacacaacac 282

                            
Query: 572 acccatacaaaagaaaa 588
           |||||||||||||||||
Sbjct: 281 acccatacaaaagaaaa 265


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space:   565284
Effective search space used:   565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no493_f18.g1 MSMg01no493_f18.g1 CHROMAT_FILE:
MSMg01no493_f18.g1 PHD_FILE: MSMg01no493_f18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:51 2005
         (524 letters)



>mm_chr13_107745200_107746123
          Length = 924

 Score = 1013 bits (524), Expect = 0.0
 Identities = 524/524 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatgaaccctgtcctctttaaagtttatatttagccctaataagagttgtgttcatttga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatgaaccctgtcctctttaaagtttatatttagccctaataagagttgtgttcatttga 260

                                                                       
Query: 61  cttgtaatttcctcaaatatatacattgttttcttggcttaaatgtctgtaatttgccac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgtaatttcctcaaatatatacattgttttcttggcttaaatgtctgtaatttgccac 320

                                                                       
Query: 121 ctgtcttaggtttcttgttttttgttttgttttgtttttggagacagggtttcttctgtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtcttaggtttcttgttttttgttttgttttgtttttggagacagggtttcttctgtc 380

                                                                       
Query: 181 ctggaactcactctgtagaccaggctggcctggaactcagaaatccgcctgcctctgcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctggaactcactctgtagaccaggctggcctggaactcagaaatccgcctgcctctgcct 440

                                                                       
Query: 241 cccaagtgcgccaccacagcccagcctgtcttagggttttattgctgtgaagagaaacca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccaagtgcgccaccacagcccagcctgtcttagggttttattgctgtgaagagaaacca 500

                                                                       
Query: 301 caaccaagtcaaacctttaataatgtttaatctttaatgtctgataaaggcaaacgttta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caaccaagtcaaacctttaataatgtttaatctttaatgtctgataaaggcaaacgttta 560

                                                                       
Query: 361 gttggggctgccttggtttcagaggttcagtccattatcatggtggaaagcatggcagca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gttggggctgccttggtttcagaggttcagtccattatcatggtggaaagcatggcagca 620

                                                                       
Query: 421 tccaggcagacctggtactggaggatcccggagctctgcattatgatcaggcagcagaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tccaggcagacctggtactggaggatcccggagctctgcattatgatcaggcagcagaag 680

                                                       
Query: 481 agaactgtctgtcttctttgcaggcatccaggacgctctgattc 524
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agaactgtctgtcttctttgcaggcatccaggacgctctgattc 724


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space:   469796
Effective search space used:   469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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