Query= MSMg01no493_p04.b1 MSMg01no493_p04.b1 CHROMAT_FILE:
MSMg01no493_p04.b1 PHD_FILE: MSMg01no493_p04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:40 2005
(488 letters)
>mm_chr13_20530056_20530943
Length = 888
Score = 743 bits (384), Expect = 0.0
Identities = 431/460 (93%), Gaps = 23/460 (5%)
Strand = Plus / Minus
Query: 52 tgtgtgtgtgtgtgtgtgcatgttaggcacttgagggttatagtggactgaaggtttact 111
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 627 tgtgtgtgtgtgtgtgtgcatgttaggcacttgagggttacagtggactgaaggtttact 568
Query: 112 aaactgcagctagtaagtatcccatagactgtatgtactgtgcaatgaaaaaa------- 164
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 aaactgcagctagtaagtatcccatagactgtatgtactgtgcaatgaaaaaaaaatata 508
Query: 165 -atatatatatcagtaattcttcattaaatacatgtgattttaagggctaactggtcaag 223
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tatatatatatcagtaattctgcattaaatacatgtgattttaagggctaactggtcaag 448
Query: 224 gcttgctcataacacatgtgcctgcttgtcattgctcaggcaatgtctctgctgaagtca 283
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 447 gcttgctcataacacatgtgcctgcttgtcattgttcagtcaatgtctctgctgaagtca 388
Query: 284 gctaacagtgatctcctgtaggtac-------------a--aaggcctcagcaaggcagc 328
||||||||||||||||||||||| | | |||||||||||||||||||
Sbjct: 387 gctaacagtgatctcctgtaggtgccgctaattgaggtatgaaggcctcagcaaggcagc 328
Query: 329 caactctgttctacctgatactgccatgtggaactatttctgaccactgagtaaactccg 388
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 caactccgttctacctgatactgccatgtggaactatttctgaccactgagtaaactccg 268
Query: 389 atagtcaattgcagtcagcatttatcacacagatccccccagattgtgcctcaacatgtc 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 atagtcaattgcagtcagcatttatcacacagatccccccagattgtgcctcaacatgtc 208
Query: 449 gagctctttggttattctttgtgcaaagcccatggagtga 488
||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gagctctttggttattctttgtgcaaagcccatggagtga 168
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space: 419684
Effective search space used: 419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no493_p04.g1 MSMg01no493_p04.g1 CHROMAT_FILE:
MSMg01no493_p04.g1 PHD_FILE: MSMg01no493_p04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:40 2005
(483 letters)
>mm_chr13_20384307_20385189
Length = 883
Score = 866 bits (448), Expect = 0.0
Identities = 472/480 (98%)
Strand = Plus / Plus
Query: 1 tttctgagcctgcaaggcaaacaccatcctgcctgtcaaaatctgaacttggaagaacac 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 tttctgagcctgcaaggcaaacaccatcctgcctgtctaaatctgaacttggaagaacac 260
Query: 61 tgagaagcttggataaaatttgatttctttgaataaaggttgaatttatagaaagaatat 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgagaagtttggataaaatttgatttctttgaataaaggttgaatttatagaaagaatat 320
Query: 121 aatttcttatttcgtttctcccaagtagacagagcccaggaagcagtaagttgatagttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatttcttatttcgtttctcccaagtagacagagcccaggaagcagtaagttgatagttt 380
Query: 181 cttagagtccatgcaggccacatttcagcttctatttccctgcttccaagccatgggcta 240
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 cttagagtccatgcaggccacatttcaccttctatttccctgcttccaagccatgggcta 440
Query: 241 agaaacctgtcttttaatatatctatgattggtttccttggctgcaaactggtcacagct 300
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 441 agaaacctgtcttttaatatatctgtgattggtttccttggccgcaaactggtcacagct 500
Query: 301 ttttgtttcaaatttaccaaagcagacagagatcttagccaccctggagccctccttcat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttttgtttcaaatttaccaaagcagacagagatcttagccaccctggagccctccttcat 560
Query: 361 tttaggaagtacgtgtcttggaaaccacaggcagagttttgagttcagagttctccagag 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 561 tttaggaagtacgtgtcttggaaaccacaggcagagttttgagttcagagttcttcagag 620
Query: 421 gaacagagtagtccgtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 480
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 621 gaacagagtagtccgtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgtgtgtgtg 680
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 57
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space: 412929
Effective search space used: 412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
