Query= MSMg01no494_m18.b1 MSMg01no494_m18.b1 CHROMAT_FILE:
MSMg01no494_m18.b1 PHD_FILE: MSMg01no494_m18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:43 2005
(670 letters)
>mm_chr13_16796201_16797269
Length = 1069
Score = 1274 bits (659), Expect = 0.0
Identities = 662/663 (99%), Gaps = 1/663 (0%)
Strand = Plus / Plus
Query: 1 gatattacattgtaacattggtagagttgtttggtctatgccttccttctatagtgaagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gatattacattgtaacattggtagagttgtttggtctatgccttccttctatagtgaagc 260
Query: 61 tctgaattacttacctacacagagactcccatctgtcctacttcctctctcctcagtact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgaattacttacctacacagagactcccatctgtcctacttcctctctcctcagtact 320
Query: 121 aggtgtaacttttgaaaagttacatgtctcccactgcaatcgaagaactacttcagtttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggtgtaacttttgaaaagttacatgtctcccactgcaatcgaagaactacttcagtttt 380
Query: 181 ccagttctccaccagccttcatataccactgctaccttgtgcttgtgattgtctcaaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccagttctccaccagccttcatataccactgctaccttgtgcttgtgattgtctcaaaat 440
Query: 241 tgttaaaatgcttccataacctttgtcgtgttgaatcagcctacctgtttatgacctagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgttaaaatgcttccataacctttgtcgtgttgaatcagcctacctgtttatgacctagt 500
Query: 301 cactatacctgatattgctttggctttttttgcaaataagtgagattttaccatctgggc 360
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 501 cactatacctgatattgctttggctttttt-gcaaataagtgagattttaccatctgggc 559
Query: 361 aagattgtatgctgcaagattctcaagaccatatagacagagccaaggaaagccagagcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aagattgtatgctgcaagattctcaagaccatatagacagagccaaggaaagccagagcc 619
Query: 421 catggtctaagctcacctacttctctccacacctaaaactctcttctgtcatttggccaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 catggtctaagctcacctacttctctccacacctaaaactctcttctgtcatttggccaa 679
Query: 481 aatcctgagagttatttttgttctctgctagctaggaaactgaagtctagaaagaatctt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aatcctgagagttatttttgttctctgctagctaggaaactgaagtctagaaagaatctt 739
Query: 541 acaaattaatatttcaacaggcaacaggtcacccctctctaggacactgcattttaatga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 acaaattaatatttcaacaggcaacaggtcacccctctctaggacactgcattttaatga 799
Query: 601 gcttccatcagttatataaaatgaggagaagcactcctaaatacacaacttctaagcaat 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 gcttccatcagttatataaaatgaggagaagcactcctaaatacacaacttctaagcaat 859
Query: 661 aac 663
|||
Sbjct: 860 aac 862
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1069
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1059
Effective search space: 698940
Effective search space used: 698940
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no494_m18.g1 MSMg01no494_m18.g1 CHROMAT_FILE:
MSMg01no494_m18.g1 PHD_FILE: MSMg01no494_m18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:44 2005
(566 letters)
>mm_chr13_16872294_16873259
Length = 966
Score = 1002 bits (518), Expect = 0.0
Identities = 545/562 (96%), Gaps = 13/562 (2%)
Strand = Plus / Minus
Query: 1 aaatagtaaagattccaccggatt-------------aagcccaaagaattaaccaacat 47
|||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 786 aaatagtaaagattccaccggatttcacctttttttcaagcccaaagaattaaccaacat 727
Query: 48 tcaaatgagctacctacatactgaagtccctaatggactatgtggagagatagtcacttg 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 tcaaatgagctacctacatactgaagtccctaatggactatgtggagagatagtcacttg 667
Query: 108 caatgacgtaatggaaccatatgtaatcccatctccctgtagaaggtaaacgccatacaa 167
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 666 caatgacgtaatggaaccatatgtaatcccatctccctgtagaaggtgaacgccatacaa 607
Query: 168 ataaatgatcagtttacagaatgacctctgaatgaccagctttggtttgagcagaggcct 227
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ataaacgatcagtttacagaatgacctctgaatgaccagctttggtttgagcagaggcct 547
Query: 228 tttccacctttgcaagttggtgataaatcagcaaccagttgaccttttgcacacatgcaa 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 tttccacctttgcaagttggtgataaatcagcaaccagttgaccttttgcacacatgcaa 487
Query: 288 aaaattgtctcccaatatttccccattatatatttgccaacattgagtgtgaggtggaga 347
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 486 aaaattgtctcccaatattttcccattatatatttgccaacattgagtgtgaggtggaga 427
Query: 348 actgaatatacacaactgtagaaaattagcctcaaatgggtcaccagtgtttggctgaca 407
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 actgaatatacataactgtagaaaattagcctcaaatgggtcaccagtgtttggctgaca 367
Query: 408 ctctggctgttacttcagaaaagaaagaaaaaaacagggtgtaatattaataataatagc 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ctctggctgttacttcagaaaagaaagaaaaaaacagggtgtaatattaataataatagc 307
Query: 468 aaatacaatagatcatctgaaaaagagagctgtcatcttacttccagcatatgttgataa 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 aaatacaatagatcatctgaaaaagagagctgtcatcttacttccagcatatgttgataa 247
Query: 528 tctggttaggtgtttttttttt 549
||||||||||||||||||||||
Sbjct: 246 tctggttaggtgtttttttttt 225
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space: 531536
Effective search space used: 531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
