Query= MSMg01no495_c11.b1 MSMg01no495_c11.b1 CHROMAT_FILE:
MSMg01no495_c11.b1 PHD_FILE: MSMg01no495_c11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:10 2005
(241 letters)
>mm_chr13_115612599_115613239
Length = 641
Score = 379 bits (196), Expect = e-110
Identities = 232/256 (90%), Gaps = 22/256 (8%)
Strand = Plus / Minus
Query: 1 tgtttctctatctccagctaaaaaaaagaacaaaaacaaaattctaac----ctaaaaca 56
||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 483 tgtttctctatctccagctaaaaaaaagaacaaaaacaaaa----aacaaaaataaaaca 428
Query: 57 aaacaaaaacaaaaagcaaaccagcacgtggcacccggatttctcaccttctctgtgtgc 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 aaacaaaaacaaaaagcaaaccagcacgtggcacccggatttctcaccttctctgtgtgc 368
Query: 117 cacctgaggaacttacacccttcacaccgtggctctcaaccttcctaactcttcagtaca 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 cacctgaggaacttacacccttcacaccgtggctctcaaccttcctaactcttcagtaca 308
Query: 177 tgtcacaccgtggctctcaaccttcctaactct-------------tcat-ctgtggcga 222
|||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 307 ggtcacaccgtggctctcaaccttcctaactcttcagtacaggtcctcatgctgtggcga 248
Query: 223 ccccaaccataacatc 238
||||||||||||||||
Sbjct: 247 ccccaaccataacatc 232
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space: 146624
Effective search space used: 146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no495_c11.g1 MSMg01no495_c11.g1 CHROMAT_FILE:
MSMg01no495_c11.g1 PHD_FILE: MSMg01no495_c11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:10 2005
(559 letters)
>mm_chr13_115484452_115485410
Length = 959
Score = 1027 bits (531), Expect = 0.0
Identities = 552/559 (98%)
Strand = Plus / Plus
Query: 1 actaataaatttggcttctattgccatatacctccagccaaaagattcacatctaggcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actaataaatttggcttctattgccatatacctccagccaaaagattcacatctaggcac 260
Query: 61 attccccagtacagagatcctaaattgtgttctgtatcatcccattccacattcccttga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attccccagtacagagatcctaaattgtgttctgtatcatcccattccacattcccttga 320
Query: 121 attccctctgcattcctgctggtctcttgacctgcaccacagattttactttctaaagtt 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 attccctctgcattcctgctggtctcctgacctgcaccacagattttactttctaaagtt 380
Query: 181 ttagaaatgggtgaaaagcatttgagacaaatcaacggtcctgtaagagttctcctgcga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 381 ttagaaatgggtgaaaagcatttgagacaaatcaacggtcctgtaagagttctcccgcaa 440
Query: 241 tcctattattccagtggatacagcattgtcttcgaacccatgtcaggattggaaacataa 300
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 441 tccgattattccagtggatacagcattgtcttccaacccatgtcaggattggaaacataa 500
Query: 301 tctgtgacatcatcccgtttgccttggggcttccagaggattgatttaggtggtctccag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctgtgacatcatcccgtttgccttggggcttccagaggattgatttaggtggtctccag 560
Query: 361 tgagaaccagaatctagtcttaacaatgtctgcctttctgtgagaacaaatcaagacaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgagaaccagaatctagtcttaacaatgtctgcctttctgtgagaacaaatcaagacaac 620
Query: 421 atatgataaaattgtctaagttggactgatagagttgaacgagtccctgatacaagcagc 480
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 621 atatgataaaattgtctaagttggcctgatagaattgaacgagtccctgatacaagcagc 680
Query: 481 aagcaacttaagtcctggaaataaactccttcctgaatggaataattttactctcaaagg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aagcaacttaagtcctggaaataaactccttcctgaatggaataattttactctcaaagg 740
Query: 541 ttgttaacctcatttggta 559
|||||||||||||||||||
Sbjct: 741 ttgttaacctcatttggta 759
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space: 521001
Effective search space used: 521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
