Query= MSMg01no496_f08.b1 MSMg01no496_f08.b1 CHROMAT_FILE:
MSMg01no496_f08.b1 PHD_FILE: MSMg01no496_f08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:38 2005
(564 letters)
>mm_chr13_11901258_11902221
Length = 964
Score = 1038 bits (537), Expect = 0.0
Identities = 552/557 (99%)
Strand = Plus / Plus
Query: 5 gaattctagttctctagttgacttcagagctgtatcactagccttatttataaatataaa 64
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctagctctctagttgacttcagagctgtatcactagccttatttataaatataaa 264
Query: 65 cctacaagcttttgtggaactctccactgtaaactgaggttccctggaaaacaaggctgc 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 actacaagcttttgtggaactctccactgtaaactgaggttccctggaaaacaaggctgc 324
Query: 125 acctcccacctgcccttctgcagggcggagtaactgactgggatgcaggcagtggtggaa 184
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acctcccaccggcccttctgcagggcggagtaactgactgggatgcaggcagtggtggaa 384
Query: 185 tggttggtacggtacaggtccagagcttaattaagatttatcttttgctatcttcagcat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tggttggtacggtacaggtccagagcttaattaagatttatcttttgctatcttcagcat 444
Query: 245 ccttcatagccattccttgcacttctgagtctgacttgacatccttgtacctaacagatt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccttcatagccattccttgcacttctgagtctgacttgacatccttgtacctaacagatt 504
Query: 305 aaacctctcataacatattaacaaaccacttatgttagcattctttctaggccccacccc 364
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 505 aaacctctcataacatattaacaaaccacttatgttaacattctttctaggccccacccc 564
Query: 365 acagttacctagcaacagccaggtatgcctgactcactataaaaggggctgtttgccctc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 acagttacctagcaacagccaggtatgcctgactcactataaaaggggctgtttgccctc 624
Query: 425 tcctctctctcttaccctcttactctcttgcctctctgtcccttctccccccattcccct 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tcctctctctcttaccctcttactctcttgcctctctgtcccttctccccccattcccct 684
Query: 485 cctcacctctcttcacaagttcatagccagcctctactcctctactttctcttctcttct 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cctcacctctcttcacaagttcatagccagcctctactcctctactttctcttctcttct 744
Query: 545 ctcctctcctctcctct 561
|| ||||||||||||||
Sbjct: 745 cttctctcctctcctct 761
Score = 56.8 bits (29), Expect = 4e-12
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 394 tgactcactataaaaggggctgtttgccc 422
|||||||||||||||||||||||||||||
Sbjct: 29 tgactcactataaaaggggctgtttgccc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space: 528516
Effective search space used: 528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no496_f08.g1 MSMg01no496_f08.g1 CHROMAT_FILE:
MSMg01no496_f08.g1 PHD_FILE: MSMg01no496_f08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:38 2005
(613 letters)
>mm_chr13_12046574_12047584
Length = 1011
Score = 868 bits (449), Expect = 0.0
Identities = 486/499 (97%), Gaps = 2/499 (0%)
Strand = Plus / Minus
Query: 115 aaaaatcacacctccatttttagcaagttaaattttatttatttatttgcttattttatt 174
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1011 aaaaatcacacctccatttttagcaagttaaaatttatttatttatttgcttattttatt 952
Query: 175 tattgatggtagaatgcagggcaggggtagtgtaggatagggtaggatagggtagacagg 234
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 951 tattgatggtagaatgcagggcaggggtagtgtaggatagggtgggatagggtggacagg 892
Query: 235 ggggctcatatgccatggtacacttgaaggtcagagaacatcttctggaatctattaccc 294
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 891 ggggctcataggccatggtacacttgaaggtcagagaacatcttctggaatctattaccc 832
Query: 295 tcttccacaaatgggttccagagattgaactcaggttatgtgtgagtcttggtggcaagc 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 tcttccacaaatgggttccagagattgaactcaggttatgtgtgagtcttggtggcaagc 772
Query: 355 aatattactaagccatcttactggtgctattcggataagttttaaagtcccagggtgtgc 414
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 agtattactaagccatcttactggtgctattcggataagttttaaagtcccagggtgtgc 712
Query: 415 atgggagagttgaacagaggggatccaactctgtgtattttttattttgagccataataa 474
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 711 atgggagagttgaacagaggggatccaactctgt--attttttattttgagccataataa 654
Query: 475 atgttgtggcttaaaatgaactatgacatgattgttttaggttttaactacagtacatat 534
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 653 atgttgtggcttaaagtgaactatgacatgattgttttaagttttaactacagtacatat 594
Query: 535 ttcatctatccctccttattttatgtatatgagtattttgcctgcctgtatgtctgtgca 594
|||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 593 ttcacctatccctccttattttatatatatgtgtattttgcctgcctgtatgtctgtgca 534
Query: 595 ccatatgagttcctgatgc 613
|||| ||||||||||||||
Sbjct: 533 ccatttgagttcctgatgc 515
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1011
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1001
Effective search space: 603603
Effective search space used: 603603
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
