Query= MSMg01no496_h24.b1 MSMg01no496_h24.b1 CHROMAT_FILE:
MSMg01no496_h24.b1 PHD_FILE: MSMg01no496_h24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:51 2005
(585 letters)
>mm_chr13_19674780_19675764
Length = 985
Score = 878 bits (454), Expect = 0.0
Identities = 515/546 (94%), Gaps = 18/546 (3%)
Strand = Plus / Minus
Query: 56 tcttcctgcaggtggttattgctcagattagccaggatcatgggatgtagcattaggcac 115
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 985 tcttcctgcaggtggttattgctcagattagccaggatcgtgggaggtagcattaggcac 926
Query: 116 caagtcaaaaactgtcctagctgtcatggctttttcctcagccttctgtgaatccactca 175
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 925 caagtcaaaaactgtcctagctctcatggctttttcctcagccttctgtgaatccactca 866
Query: 176 gcattggaagtggattatttctgaagatgagccacttgagttcggactaaaat------a 229
|||||||||||||||||||||||||||||||||||||||||| || ||||||| |
Sbjct: 865 gcattggaagtggattatttctgaagatgagccacttgagttggggctaaaatggacaga 806
Query: 230 gt------------ctgctttggaaggcaactaatttagtccctccctcctctagttggc 277
|| ||||| | ||||||||||||||| ||||||| ||||||||||||||
Sbjct: 805 gttggtatgttagcctgctctagaaggcaactaatttggtccctctctcctctagttggc 746
Query: 278 ttagattcggtgttctacagaaatatctagagccaaagctctagcaagcaatggaaattg 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 745 ttagattcggtgttctacagaaatatctagagccaaagctctagcaagcaatggacattg 686
Query: 338 gttacctctctgtgtatcattgatggagagaatgaagtaaaatctggatatttattgaat 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gttacctctctgtgtatcattgatggagagaatgaagtaaaatctggatatttattgaat 626
Query: 398 tgtgaccaaaataacaaaacatgattttaatctcatgtctgtctccaatatcctctttat 457
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 625 tgtgaccaaaataacaaaacatgattttaatcttatgtctgtctccaatatcctctttat 566
Query: 458 ggtctccaggttccgtacttctctcaactggatgcagttagattagcaatatcaaatgct 517
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 565 ggtcgccaggttccgtacttctctcaactggatacagttagattagcaatatcaaatgct 506
Query: 518 cagtttcagattctttaagaaaactctatgtaaaccactctccatctgctaaaacttttt 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cagtttcagattctttaagaaaactctatgtaaaccactctccatctgctaaaacttttt 446
Query: 578 ttcatc 583
||||||
Sbjct: 445 ttcatc 440
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space: 560625
Effective search space used: 560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no496_h24.g1 MSMg01no496_h24.g1 CHROMAT_FILE:
MSMg01no496_h24.g1 PHD_FILE: MSMg01no496_h24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:51 2005
(519 letters)
>mm_chr13_19503658_19504576
Length = 919
Score = 996 bits (515), Expect = 0.0
Identities = 518/519 (99%)
Strand = Plus / Plus
Query: 1 actcctgctccactgagtgagtcaagacggccaggaaggaggcccccttctgccaccatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actcctgctccactgagtgagtcaagacggccaggaaggaggcccccttctgccaccatg 260
Query: 61 actcaccatgcgtgagactgagctggtgacctaggttgggagccactgtctctcccttac 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 actcaccatgcgtgagactgagctggtgacctaggtcgggagccactgtctctcccttac 320
Query: 121 atgtggactcactgctagccaaagttggttagaccaccaattccacatgtcaaattaggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgtggactcactgctagccaaagttggttagaccaccaattccacatgtcaaattaggc 380
Query: 181 ctttgcattgcaaagtaccaaggagtcacctagaggtcacgggtctcttcttcccagcta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttgcattgcaaagtaccaaggagtcacctagaggtcacgggtctcttcttcccagcta 440
Query: 241 tacttataaagttttcacacaatgtttattttggcaggaaaaatcttctgaaggttctcg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tacttataaagttttcacacaatgtttattttggcaggaaaaatcttctgaaggttctcg 500
Query: 301 tggtaatgtatgaggaagggccaaaataatggtggcatatccaggaaacctttaccattg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggtaatgtatgaggaagggccaaaataatggtggcatatccaggaaacctttaccattg 560
Query: 361 tcatggttgttttcaaagaaaattatcctcattgcttttttctcttattgagaatttcta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcatggttgttttcaaagaaaattatcctcattgcttttttctcttattgagaatttcta 620
Query: 421 gttttgttgtaagcttgctgtggtgacagaatttaagtaaatataaatttaagttagtaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gttttgttgtaagcttgctgtggtgacagaatttaagtaaatataaatttaagttagtaa 680
Query: 481 ttcctgatttttgatagccctatgttggtggaaagtttc 519
|||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttcctgatttttgatagccctatgttggtggaaagtttc 719
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space: 462681
Effective search space used: 462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
