BAC Information

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BAC

Clone NameMSMg01-497D03
Chromosome13 (Build37)
Map Location 89,491,951 - 89,492,596
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667230, EG435375, Edil3
Downstream geneHapln1, EG667266, Vcan, LOC100042940, Xrcc4, Tmem167, LOC100043170
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-497D03.T7 (MSMg01no497_d03.b1)MSMg01-497D03.TJ (MSMg01no497_d03.g1)
ACCAG573822AG573823
length752765
length of high quality
(start - end)
475 (46 - 520)645 (79 - 723)
definitionCHROMAT_FILE: MSMg01no497_d03.b1 PHD_FILE: MSMg01no497_d03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:47 2005CHROMAT_FILE: MSMg01no497_d03.g1 PHD_FILE: MSMg01no497_d03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATATGATTACCACCTCTATTGTGACTGGCAGATGCTGTTTTTTTG
GAGTCACCTTTGACCTTTGACTCTAACAATATATTTGATTCCTCTTACAC
ATAGATCACTGAGACTTGAAAAAAAAAGGTTTGATGAAGGCATCTCATTT
AAGTATGCATGCACCTAAGTCTCTCAGTCTCTGCTCATTGTCTAACTGTG
GATCTCTGTGTTAATTCTTATATATTGCAAGAAGAAGATTCTTCTCTGAG
GGTTTAACGAAACACTGATTTATAGGTATGTCATTAAGAGTTGTCTAATT
TATATGACCATTTAGCAGAATAATTGCAGTAGGTTTGCTCACAAACCCAT
GACCTTTCTAATCTCAGGTTCTTAGCTACTTTAGCACAATATTTTAGTCA
GGTATGGGTTGTGTCTCATGGAGTGATCTTAAATCCATACCATTTCTGTA
AATATTACACAAGTATATCTTGTNANGTANGTCACTGGTTGTAGACATAN
NGTTTAGTAGATTAGGTAATATGAATTCTTTTCCTCCCCTGGGGAGCATG
CAAAAAGGCCTTTCTGNAAAACTTGGAATACCAATTCCCTTAAAGAAACA
AACTTTTTTTTTTTTTAACCCAAAAAAGAGTGAGAAATTTCCTCCCGGGG
GGCCCAAANAAAATTTTTTTAAAAAAAGGGGGGGTTTTTTTTAAAAACAA
AG
CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAATCAAGTTAAAAATGTCA
GGTCCCAAGTGTTTTGTTTTCTTTAGCAGAGAAAACAGACGCATGTCAAA
AGAGGAAGCTAATTTTTAGGTGAAATGAACACAAAAATACCTTCTGGAAC
AAGCTTTTTTATTTGATTTTCCAGATGACAATGTTAACATTCTTGCCAGG
AGTATTGGGTGCTAAGACAGTGGTGTGGCACTCTTGTGTTTTAAGATGGA
CTGTCGTGGATACACAGCTCAGTGGATAATACCTTACAGCTCCGATGGGA
GAACTGGAGGTCAGATTCCCAACAGCCACATAAATGCCAGGTGACTGCCT
AACTCTGGTTGCAATGAGGAGATGACTGCTGGAGATGACTGCATCAACCT
GGCGATCCAGACTGGTCCGTTAAGCAGGCTCTGTGTGTAATTGTCAGGTA
CAGACAGTCTTCACATAAAATATGGAGAGCAATTAGGAAGACTCCAGATA
TAATCAGCCAAATAAATAATTTGCTGGTTTTAGAGATATGAAGTAAAGGG
TAGAATACAGACTTATTTGGTGATGGCTATGGTATAAAACATCCACTAAG
CTAGAAGAAAAGCCTTTGTAACACATTAGCAATGAGTTTGTACAAATAAA
TCTATTTTTAAATAAAAATTTTCAAATTCTCAGTCACTAATTGGAGAGTA
GAACTGGGCCTAGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no497_d03.g1 MSMg01no497_d03.g1 CHROMAT_FILE:
MSMg01no497_d03.g1 PHD_FILE: MSMg01no497_d03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:47 2005
         (645 letters)



>mm_chr13_89491751_89492800
          Length = 1050

 Score = 1137 bits (588), Expect = 0.0
 Identities = 630/646 (97%), Gaps = 5/646 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaaatcaagttaaaaatgtcaggtcccaagtgttttgttttctttagcagagaaaacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaaatcaagttaaaaatgtcaggtcccaagtgttttgttttctttagcagagaaaacag 260

                                                                       
Query: 61  acgcatgtcaaaagaggaagctaatttttaggtgaaatgaacacaaaaataccttctgga 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 acgcatgtcaaaagaggaagctaatttttagctgaaatgaacacaaaaataccttctgga 320

                                                                       
Query: 121 acaagcttttttatttgattttccagatgacaatgttaacattcttgccaggagtattgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaagcttttttatttgattttccagatgacaatgttaacattcttgccaggagtattgg 380

                                                                       
Query: 181 gtgctaagacagtggtgtggcactcttgtgttttaagatggactgtcgtggatacacagc 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 gtgctaagacagtggtgtggcactcttgtgttttaagatggactgtcgtggagacacagc 440

                                                                       
Query: 241 tcagtggataataccttacagctccgatgggagaactggaggtcagattcccaacagcca 300
           |||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||
Sbjct: 441 tcagtggataataccttacagctcagacgggagaactggaggtcagatttccaacagcca 500

                                                                       
Query: 301 cataaatgccaggtgactgcctaactctggttgcaatgaggagatgactgctggagatga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cataaatgccaggtgactgcctaactctggttgcaatgaggagatgactgctggagatga 560

                                                                       
Query: 361 ctgcatcaacctggcgatccagactggtccgttaagcaggctctgtgtgtaattgtcagg 420
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgcatcaacctggcgatccggactggtccgttaagcaggctctgtgtgtaattgtcagg 620

                                                                       
Query: 421 tacagacagtcttcacataaaatatggagagcaattaggaagactccagatataatcag- 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 621 tacagacagtcttcacataaaatatggagagcaattaggaagactccagatataatcatt 680

                                                                       
Query: 480 ---ccaaataaataatttgctggttttagagatatgaagtaaagggtagaatacagactt 536
              ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 681 caaccaaataaataatttgctggttttagagatatgaagtaaaggggagaatacagactt 740

                                                                       
Query: 537 atttggtgatggctatggtataaaa-catccactaagctagaagaaaagcctttgtaaca 595
           ||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||
Sbjct: 741 atttggtgatggctatggtataaaaacgtccactaagatagaagaaaagcctttgtaaca 800

                                                         
Query: 596 cattagcaatgagtttgtacaaataaatctatttttaaataaaaat 641
           ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 801 cattagcaatgagtttgtacaaataaatctattcttaaataaaaat 846


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1050
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1040
Effective search space:   660400
Effective search space used:   660400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)