Query= MSMg01no497_d07.b1 MSMg01no497_d07.b1 CHROMAT_FILE:
MSMg01no497_d07.b1 PHD_FILE: MSMg01no497_d07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:48 2005
(670 letters)
>mm_chr13_21107672_21108741
Length = 1070
Score = 1185 bits (613), Expect = 0.0
Identities = 658/684 (96%), Gaps = 18/684 (2%)
Strand = Plus / Plus
Query: 5 gaattctatatattccagctctgaattgtatttgctcttttgaaaataatacagacaagt 64
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 187 gaattctatatagtcaagctctgaattgtatttgctcttttgaaaataatacagacaggt 246
Query: 65 atttttggcttagtatttacctctatggttatttcactaaaaaacaaagacaaaaacaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 atttttggcttagtatttacctctatggttatttcactaaaaaacaaagacaaaaacaaa 306
Query: 125 caaacaaacaaacaaataaa----actgacaaaagtagtttatagaaaggaagggtggga 180
|||||||||||||||| ||| || |||||||||||||||||||||||||||||||||
Sbjct: 307 caaacaaacaaacaaacaaacaaaaccgacaaaagtagtttatagaaaggaagggtggga 366
Query: 181 ggattctccagtccctgctggtattctgtcttcctggtgtttcttactcaactttgggag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ggattctccagtccctgctggtattctgtcttcctggtgtttcttactcaactttgggag 426
Query: 241 gtgaacagacgcatttgcttggggggggggg--------------tagagcacttcctgg 286
||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 427 gtgaacagacgcatttgcttgggggggggggaggttgggggggggtagagcacttcctgg 486
Query: 287 ggaagttttcctgtcaacagcaattcagttggcccatgaagcatagctttgtctaaagtt 346
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 487 ggaagttttcctgtcaacagcaatccagttggcccatgaagcatagctttgtctaaagtt 546
Query: 347 tgtcatctgagggtggaggaatttgcaagctctaggttatctagccattcacctcctccc 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 tgtcatctgagggtggaggaatttgcaagctctaggttatctagccattcacctcctccc 606
Query: 407 ttccactgccctcctcaccccatgggatcaggccttgtgtgtaaaaactaaaagagacac 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 ttccactgccctcctcaccccatgggatcaggccttgtgtgtaaaaactaaaagagacac 666
Query: 467 tccactgaaaactcacatgagacaatagagggataagccctcctgctttgtagattcttc 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 tccactgaaaactcacatgagacaatagagggataagccctcctgctttgtagattcttc 726
Query: 527 taagagaactttaaggaagaacaaaggattttcagtagatctggggatatcatggtttac 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 taagagaactttaaggaagaacaaaggattttcagtagatctggggatatcatggtttac 786
Query: 587 ccaacgttcaggcctctgaatgacagtagacaggagcctgtcagagcangaaaatccctt 646
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 787 ccaacgttcaggcctctgaatgacagtagacaggagcctgtcagagcaggaagatccctt 846
Query: 647 cagacatgctttacctttggagca 670
||||||||||||||||||||||||
Sbjct: 847 cagacatgctttacctttggagca 870
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space: 699600
Effective search space used: 699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no497_d07.g1 MSMg01no497_d07.g1 CHROMAT_FILE:
MSMg01no497_d07.g1 PHD_FILE: MSMg01no497_d07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:48 2005
(631 letters)
>mm_chr13_21264506_21265536
Length = 1031
Score = 996 bits (515), Expect = 0.0
Identities = 547/567 (96%), Gaps = 18/567 (3%)
Strand = Plus / Minus
Query: 1 cgtcgcactctggaagggccaggaaccgaggcgataaacgccgaattccagataggattg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 cgtcgcactctggaagggccaggaaccgaggcgataaacgccgaattccagataggattg 491
Query: 61 gagaaaaacaaacaaacaaacaaacaaacaaacaaacaaacaaacaaaccaaccaataac 120
||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 490 gagaaaaacaaacaaacaaacaaacaaac---------------c-aaccaaccaataac 447
Query: 121 aaaaaacaatactaaagggttttttctgtccatgtttagaatagagaaaaataatttagt 180
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 aaaaaacaacactaaagggttttttctgtccatgtttagaatagagaaaaataatttagt 387
Query: 181 taactttacagggagttacttatatttccatgcacattaattacagttgaaagaatcatt 240
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 taactttacagggagttagttatatttccatgcacattaattacagttgaaagaatcatt 327
Query: 241 aattgctatgga-gctggcatgtcaggatggccgagtggtctaaggcgccagactcaagc 299
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aattgctatggaggc-ggcatgtcaggatggccgagtggtctaaggcgccagactcaagc 268
Query: 300 tatggcttcctcgctctgagggttctggtctcccctggaggcgtgggttcgaatcccact 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tatggcttcctcgctctgagggttctggtctcccctggaggcgtgggttcgaatcccact 208
Query: 360 tctgacagctgtatttttctttcacagactcatctgttcattttctatgctagcctactc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 tctgacagctgtatttttctttcacagactcatctgttcattttctatgctagcctactc 148
Query: 420 cagaccttccgtgaaccttgtcccactgatctgtgcttcagccctaaaggtgcatttgac 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 cagaccttccgtgaaccttgtcccactgatctgtgcttcagccctaaaggtgcatttgac 88
Query: 480 accaaccatcaacgcacagaactgggaccccctgttggaaaacaggctcgtggcagccat 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87 accaaccatcaacgcacagaactgggaccccctgttggaaaacaggctcgtggcagccat 28
Query: 540 atactacatgagctgtttgaatcttgc 566
|||||||||||||||||||||||||||
Sbjct: 27 atactacatgagctgtttgaatcttgc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space: 634041
Effective search space used: 634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
