NNNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAAGAGTTTTCCTGAAATACCTATGCCCTGCTCATTGTT
ACTATAGGGAGAGGATGCCAAAAGCCTTTCTCTGTGTTTTGAAGATCCAT
TCCTGTTCTTGCTAAACCCTGGTGCGTTTGAACACATCTTCACTTTCGAA
GCCTCTTGGTCTCCTGGTTGCTGACAACAGGCTCACCTAGTGCCCTATGC
CAGTGCTGAGCAGAATCCTCTGAGGATCATAGACCTCAGAGGTGTTGGTG
GATACCCAAAAGCCAGAGTCTAGATTTTAAGACCACCACACAAAACAAAG
CTGGAGACACTGCCTCCTCTGAGCATCATGGAACAGTTTTACTCTGCTGA
GGAAATGGCTCCAGCATGGGGAACTCCTGCATACCAATTTCAACTCCAAC
ACCTCAGAAAACCACATGCTAGCCCCATGTCCATCTGTAATACCCTGAAA
TGACTACAGTTAGAAGATATTTTCCATTGAATTTCCATATTTGCCATTTC
CCTAACCACTGTGCAATAAACCCCATAAATTAAGAAGAAGAAGAAGAAGA
AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG
AAGAATAATAAAAACCAGATAGATATATCAAACGCCTTAAAAACCAATGG
AGCTCAGATTGCTTCTCCATCCTAGCTGTGCATTGTACTGACCTGAA

NNNCCCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATATTGGTTCCCTGAACTGT
AAAGTGAGGGCTATTATGGTTGGAAAGGCCAAATGGAAGCCTTTAGAGTT
GCCTCTGCCAAAGAAAATAGTGAATCAAAAACAGTATCGTATTCCTGGAG
GAATTGCAGAAATTACTGCCACTATCAAGGACTTGAAAGATGCAGGGGTG
GTGGTTCCCACCACATCTCCATTTAACTCTCCTATCTGGCCAGTGCAGAA
AACAGATGGATCATGGTTTTATGACAGTTGATTATCGAAAACTAAATCAG
GTAGTAACTCCAATTGCAGCTGCTGTACCAGATGTAGTTTCGTTACTTGA
GCAAATTAACACATCTCCGGGCACCTGGTATGCAGCTATTGATCTGGCAA
ATGCCTTCTTCTCAGTACCTGTCCATAAGGACCACCAGAAGCAATTTGCT
TTCAGTTGGCAAGGCCAACAGTATACCTTCACAGTTTTGCCTCAAGGATA
TATTAACTCTCCTGCCCTGTGTCATAATTTAGTTAGAAGGGATCTTGATC
GTTTGGATCTTCCACAAAATATCACATTGGTGCACTATATTGATGACATT
ATGCTGATTGGACCAAGTGAGCAGGAAGTAGCAACTACTTTGGACTCATT
GGTAACACATATGCGTATCAGAGGATGGGAAATAAATCCAACCAAAATTT
CAAGAN

Query= MSMg01no497_i10.b1 MSMg01no497_i10.b1 CHROMAT_FILE:
MSMg01no497_i10.b1 PHD_FILE: MSMg01no497_i10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:15 2005
         (578 letters)



>mm_chr13_76042419_76043396
          Length = 978

 Score = 1087 bits (562), Expect = 0.0
 Identities = 574/582 (98%), Gaps = 8/582 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatacctatgccctgctcattgttactatagggagaggatgccaaaagcctttctctgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatacctatgccctgctcattgttactatagggagaggatgccaaaagcctttctctgtg 260

                                                                       
Query: 61  ttttgaagatccattcctgttcttgctaaaccctggtgcgtttgaacacatcttcacttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttgaagatccattcctgttcttgctaaaccctggtgcgtttgaacacatcttcacttt 320

                                                                       
Query: 121 cgaagcctcttggtctcctggttgctgacaacaggctcacctagtgccctatgccagtgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgaagcctcttggtctcctggttgctgacaacaggctcacctagtgccctatgccagtgc 380

                                                                       
Query: 181 tgagcagaatcctctgaggatcatagacctcagaggtgttggtggatacccaaaagccag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgagcagaatcctctgaggatcatagacctcagaggtgttggtggatacccaaaagccag 440

                                                                       
Query: 241 agtctagatttt----aagaccaccacacaaaacaaagctggagacactgcctcctctga 296
           ||||||||        ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtctaga----cagcaagaccaccacacaaaacaaagctggagacactgcctcctctga 496

                                                                       
Query: 297 gcatcatggaacagttttactctgctgaggaaatggctccagcatggggaactcctgcat 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gcatcatggaacagttttactctgctgaggaaatggctccagcatggggaactcctgcat 556

                                                                       
Query: 357 accaatttcaactccaacacctcagaaaaccacatgctagccccatgtccatctgtaata 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 accaatttcaactccaacacctcagaaaaccacatgctagccccatgtccatctgtaata 616

                                                                       
Query: 417 ccctgaaatgactacagttagaagatattttccattgaatttccatatttgccatttccc 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ccctgaaatgactacagttagaagatattttccattgaatttccatatttgccatttccc 676

                                                                       
Query: 477 taaccactgtgcaataaaccccataaattaagaagaagaagaagaagaagaagaagaaga 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 taaccactgtgcaataaaccccataaattaagaagaagaagaagaagaagaagaagaaga 736

                                                     
Query: 537 agaagaagaagaagaagaagaagaagaagaagaagaagaaga 578
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 agaagaagaagaagaagaagaagaagaagaagaagaagaaga 778


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 112
Number of extensions: 34
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space:   549824
Effective search space used:   549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)