Query= MSMg01no498_g08.b1 MSMg01no498_g08.b1 CHROMAT_FILE:
MSMg01no498_g08.b1 PHD_FILE: MSMg01no498_g08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:24 2005
(542 letters)
>mm_chr13_24477061_24478001
Length = 941
Score = 936 bits (484), Expect = 0.0
Identities = 519/536 (96%), Gaps = 10/536 (1%)
Strand = Plus / Plus
Query: 7 ttccaaacttttactatcttcagctggcaaaagcatgcccctgccaaagcatgaggcaaa 66
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ttccaaacttacactatcttcagctggcaaaagcatgcccctgccaaagcatgaggcaaa 266
Query: 67 tcataatcagttgctttggactctgaagtggccccatatcccacacttgggattaagaca 126
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 267 tcatagtcagttgctttggactctgaagtggccccatatcccacacttgggattaaaaca 326
Query: 127 aaacacatccacataacatgactgagtttttaaggaaaacagatgagagatgcatgcagt 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aaacacatccacataacatgactgagtttttaaggaaaacagatgagagatgcatgcagt 386
Query: 187 gcaatggtctgccaacttctgtgtttgactttgggaggagtgccagtggttggccattct 246
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 387 gcaatggtctgccaacttctgtgtttgactttgggaggagtgccagtgcttggccattct 446
Query: 247 tcttttgtgaatggatgctctctctttatactatatgcaagagcaggatcatctaccctg 306
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 447 tcttttgtgaatggatgctctctctttagacta-atgcaagagcaggatcatctaccctg 505
Query: 307 caccagcccaaatgggctaaagttctcattttggaggtttcagaaatatctctggatctt 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 caccagcccaaatgggctaaagttctcattttggaggtttcagaaatatctctggatctt 565
Query: 367 cccagcaggttctgcacataacaccacctctctttactggcggagtaaataagcctttag 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 cccagcaggttctgcacataacaccacctctctttactggcggagtaaataagcctttag 625
Query: 427 attattttcatcttatcacacttatcacacagtaaggcgggggtgggcctgtggcagggg 486
||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 626 attattttcatcttatcacac---------agtaaggcgggggtgggcctgtggcatggg 676
Query: 487 agggagctgggcacatggcaggggagggggttctccctgggagtccccttagcagc 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 agggagctgggcacatggcaggggagggggttctccctgggagtccccttagcagc 732
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 941
Length adjustment: 10
Effective length of query: 532
Effective length of database: 931
Effective search space: 495292
Effective search space used: 495292
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no498_g08.g1 MSMg01no498_g08.g1 CHROMAT_FILE:
MSMg01no498_g08.g1 PHD_FILE: MSMg01no498_g08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:24 2005
(576 letters)
>mm_chr13_24646831_24647806
Length = 976
Score = 706 bits (365), Expect = 0.0
Identities = 392/401 (97%), Gaps = 2/401 (0%)
Strand = Plus / Minus
Query: 1 catcccttggaagctccttagtggggcgacttcaacttttcattctaaatcttaggacct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 catcccttggaagctccttagtggggcgacttcaacttttcattctaaatcttaggacct 341
Query: 61 acaaaggatcatcatgctgttttaactcatggatttgtgtttattccttagttgggtgcc 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 340 acaaaggatcatcatgctgttttaactcatggatttgtttttattccttagttgggtgcc 281
Query: 121 cccagttccctaacataggcctaattgccatggttagtaacaatgagtaacttggaactt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 cccagttccctaacataggcctaattgccatggttagtaacaatgagtaacttggaactt 221
Query: 181 aggcattcatgtctgctcctcagaaatggcaggcgtgcatcatgattatacccaaccagg 240
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 aggcattcacgtctgctcctcagaaatggcaggcgtgcatcatgattatacccaaccagg 161
Query: 241 agattctt-attgtgactgctttctgcatctgcaatcgcacagacagcaaaagggcacag 299
||| ||| | ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 agactctggag-gtgactggtttctgcatctgcaatcgcacagacagcaaaagggcacag 102
Query: 300 tggtggtgcctcctggtcttccaaaggtgattcgtgacaagcagcattattgagagagaa 359
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 tggtggtgccccctggtcttccaaaggtgattcgtgacaagcagcattattgagagagaa 42
Query: 360 agcaggctcagccttggtcagggaagcctcttcagcaatga 400
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 41 agcaggctcagccttggtcagggaagcctcttcagcaatga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space: 546756
Effective search space used: 546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
