BAC Information

Click to search

BAC

Clone NameMSMg01-498K04
Chromosome13 (Build37)
Map Location 66,204,940 - 66,205,582
singlet/doubletsinglet
Overlap genenone
Upstream geneHiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767, LOC665777, EG628648, LOC665809, LOC100042404, LOC628722, LOC665851, Vmn2r-ps99, LOC628794, EG665897, LOC100041855, EG628746, LOC100042434
Downstream geneLOC100041892, EG665974, LOC100041915, 2410141K09Rik, C330014B19Rik, Mzf6d, Vmn2r-ps106, LOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1, Ptdss1, Zfp712, Zfp708
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-498K04.T7 (MSMg01no498_k04.b1)MSMg01-498K04.TJ (MSMg01no498_k04.g1)
ACCAG574911AG574912
length748723
length of high quality
(start - end)
647 (54 - 700)663 (58 - 720)
definitionCHROMAT_FILE: MSMg01no498_k04.b1 PHD_FILE: MSMg01no498_k04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:45 2005CHROMAT_FILE: MSMg01no498_k04.g1 PHD_FILE: MSMg01no498_k04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:45 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NNNNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCATAATCAGTGTTAGGATATTCATTATGGAATGATGTT
TTTTTTTGTCATGACAGGGTTTCTCTGTGTAACAGCCCAGCTCTCCTAGA
ACTTGCTTTGCAGACCAGGCTGACCTCTAACTCACAGACATGCTTGCCTC
TGCCTCCTGAGTGCTGGGATAAAAGGCATGCACCACTATAACCCAGCTAG
ATAATCTTTTTAGTCAGATGACAAACTAAGTCAGAAATTGTGGTAGGATG
AATGGTGTGGGTGCTGTGGTCCCAGGGTGGGGCCTGGTAGACAGTTAGGG
AGGCTCCCATACAGCTCTGACCGTATGAGACATGGGCATGTCTGTGGCAT
ATTGAGTGTCTTAGTCAGGGTTTCTATTCCTGCACAAACATCATGACCAA
GAAGCAAGTTGGGGAGGAAAGGGTTTATTCGGCTTACACTTCCATACTGC
TGTTCATCACCAAGGAAGTCAGGACTGGAACTCATGCAGGTCAGGAAGCA
GGAGCTGATGCAGAGGCCATGGAGGGATGTTCTTTACTGGCTTGCCTCAC
CTGGCTTGCTCAGCCTGCTCTCTTATAGAACCCAAGACTACCAGCCCAGA
GATCTTCCCACCCACAAGGGGCCTTTCCCCCTTGATCACTAATTGAGAAA
ATGCCTTACAGTTGGATCTCATGGAGGCATTTCCTCTAGTGAAGCTCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCTTGATCCACGTAGACTTGAGCTTTGTACAAGGAGACAAGAAT
GAATCATTTTCATTCCTTCTACATGATAACTGCCAGTTGTACCTGCACCA
TTTGTTGAAAATGCTGTCTTTTTTTCCACTGGATGGTTTTAGCTCCCTTG
TCAGTGATCAAGTGACCATAGGTGTGTGAGTTCATCTCTGGGTCTTCAAT
TCTATTCCATTTGATCTACTTGTCTGTCACTATACCAGTACCATGCAGTT
TTTATCACAATTGCTCTGTAGTACAGCTTCAGGTCAGGCATGGTGATTCC
ATCAGAGGTTCTTTTATCATTGAGAATAGCTTTTGCTATCCTAGGTTTTT
TGCTATTTCAGATGAATTTGCAGATTTCCCTTTCTAATTCGATGAAGAAT
TGAATTGGAAGTTTGATGGAGATTGCATTGAATCTGTAGATTGATTTTGG
TAAGATAGCCATTTTTACTATATGGATCCTGCCAATCCATGAGCATGGGA
GATCTTTCCATCTTCTGAGATCTTCCTTTATTTCTTTCTTCAGAGACTTG
AAGTTCTTACCATACAGATCTTTCACTTTCTTAGTTAGAGTCACACCAAG
GCATTTCATATTATTTGTGCCTATTGTGAAGGGTGCTGTTTCCCTAATTT
CTTTTTCATCCTCTTTATCCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no498_k04.b1 MSMg01no498_k04.b1 CHROMAT_FILE:
MSMg01no498_k04.b1 PHD_FILE: MSMg01no498_k04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:45 2005
         (647 letters)



>mm_chr13_66204839_66205885
          Length = 1047

 Score = 1236 bits (639), Expect = 0.0
 Identities = 642/643 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcataatcagtgttaggatattcattatggaatgatgtttttttttgtcatgacag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gaattcataatcagtgttaggatattcattatggaatgatgtttttttttgtcatgacag 685

                                                                       
Query: 65  ggtttctctgtgtaacagcccagctctcctagaacttgctttgcagaccaggctgacctc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ggtttctctgtgtaacagcccagctctcctagaacttgctttgcagaccaggctgacctc 625

                                                                       
Query: 125 taactcacagacatgcttgcctctgcctcctgagtgctgggataaaaggcatgcaccact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 taactcacagacatgcttgcctctgcctcctgagtgctgggataaaaggcatgcaccact 565

                                                                       
Query: 185 ataacccagctagataatctttttagtcagatgacaaactaagtcagaaattgtggtagg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ataacccagctagataatctttttagtcagatgacaaactaagtcagaaattgtggtagg 505

                                                                       
Query: 245 atgaatggtgtgggtgctgtggtcccagggtggggcctggtagacagttagggaggctcc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 atgaatggtgtgggtgctgtggtcccagggtggggcctggtagacagttagggaggctcc 445

                                                                       
Query: 305 catacagctctgaccgtatgagacatgggcatgtctgtggcatattgagtgtcttagtca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 catacagctctgaccgtatgagacatgggcatgtctgtggcatattgagtgtcttagtca 385

                                                                       
Query: 365 gggtttctattcctgcacaaacatcatgaccaagaagcaagttggggaggaaagggttta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gggtttctattcctgcacaaacatcatgaccaagaagcaagttggggaggaaagggttta 325

                                                                       
Query: 425 ttcggcttacacttccatactgctgttcatcaccaaggaagtcaggactggaactcatgc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttcggcttacacttccatactgctgttcatcaccaaggaagtcaggactggaactcatgc 265

                                                                       
Query: 485 aggtcaggaagcaggagctgatgcagaggccatggagggatgttctttactggcttgcct 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aggtcaggaagcaggagctgatgcagaggccatggagggatgttctttactggcttgcct 205

                                                                       
Query: 545 cacctggcttgctcagcctgctctcttatagaacccaagactaccagcccagagatcttc 604
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 cacctggcttgctcagcctactctcttatagaacccaagactaccagcccagagatcttc 145

                                                      
Query: 605 ccacccacaaggggcctttcccccttgatcactaattgagaaa 647
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 ccacccacaaggggcctttcccccttgatcactaattgagaaa 102


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space:   660569
Effective search space used:   660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)