BAC Information

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BAC

Clone NameMSMg01-499G14
Chromosome13 (Build37)
Map Location 15,625,553 - 15,625,860
singlet/doubletsinglet
Overlap geneGli3
Upstream geneMrpl32, Psma2, AW209491, EG665099, LOC670994, EG625121
Downstream geneLOC665157, Inhba, LOC625181
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-499G14.T7 (MSMg01no499_g14.b1)MSMg01-499G14.TJ (MSMg01no499_g14.g1)
ACCAG575499AG575500
length731747
length of high quality
(start - end)
308 (322 - 629)610 (59 - 668)
definitionCHROMAT_FILE: MSMg01no499_g14.b1 PHD_FILE: MSMg01no499_g14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:47 2005CHROMAT_FILE: MSMg01no499_g14.g1 PHD_FILE: MSMg01no499_g14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTTTCAAAATCCGCGGAATCATATTC
TGCTTACTCCAAAACTATTTGGGTTCTGAATGCCCCCTAAAGGCCTGGTG
CCCAGGTTGGTGCTATTGGGAGATAGATTGTCCCCTAAAGGCCTGGTCCC
CAGGTTGGTGCTCTTGGGAGATTGTGGAGCCTTGACTAGGTGGGAATGAC
TGGGAGGTTTTCAGAGCAATCTCACATGGGGTGATAGGATGCCTGACTTT
CCTTTCTGCCTCCTTTGCTTCCTGGCATGAGGTCAGCAGTTTTGTTGTAC
CATATACCCTGCTTTTTATAAGATCATTCCTTGTTATAGACGCAAAGAAC
TGGGCAGGGTGAATCTTAGAGCAGAGCCTTTAAACTTTGAGGTGAGTATT
TGCTCAGCTACTCCAGTGACAGAAAGCTGGTGTCCCCCTACCATTCTGTG
GTTGTGCAGATGACTTCTCTCCTGCTCCTGAGTTTTGCTGTCATTAGCAC
AAACTTGGGCCTTGACAGTATGAAAATGAAGACAACAGGATATGCGCCAT
TAAAAGGAAGGCCCAGGATTAGGATAGATGAATTTGCCTGTGAGAGTCCA
TGCCCTTTCATATGGGTTGCCACCCCAGAGAATGGCCCAGATTTAAGACT
TTCCAGTCAGTCTGACCTGTTCAGGCATGCGTCTCCAGCCTCTTTGGCAT
TAGCTGAATCTAAACGCAGTCATGTTGACAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAA
TGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTAAG
ATTCCACCTCACACCAGTCAGAATGTCTAAGATCAAAAATTCAGGTGACA
GCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGG
TGGGATTGCAGGCTTGTACAACCACTCTGGAAATCCGTCTGGCGGTTCCT
CAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGG
GCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACT
ATGTTCATAGCAGCATTATTTATAATAGCCAGAAGCTGGAAAGAACCCAG
ATGCCCCTCAACAGAGGAATGGATACAGAAAATATGGTACATCTACACAA
TGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCC
AAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACA
AAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAAAA
CCTAGGATACCCAAGATATAAGATACAATTTCCTAAACACATGAAACTCA
AGAAAAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no499_g14.b1 MSMg01no499_g14.b1 CHROMAT_FILE:
MSMg01no499_g14.b1 PHD_FILE: MSMg01no499_g14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:47 2005
         (308 letters)



>mm_chr13_15625353_15626060
          Length = 708

 Score =  557 bits (288), Expect = e-163
 Identities = 303/308 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatcattccttgttatagacgcaaagaactgggcagggtgaatcttagagcagagccttt 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gatcattctttgttatagacgcaaagaactgggcagggtgaatcttagagcagagccttt 260

                                                                       
Query: 61  aaactttgaggtgagtatttgctcagctactccagtgacagaaagctggtgtccccctac 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaactttgagttgagtatttgctcagctactccagtgacagaaagctggtgtccccctac 320

                                                                       
Query: 121 cattctgtggttgtgcagatgacttctctcctgctcctgagttttgctgtcattagcaca 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 cattctgtggttgtgcagatgacttctctcctactcctgagttttgctgtcattagcaca 380

                                                                       
Query: 181 aacttgggccttgacagtatgaaaatgaagacaacaggatatgcgccattaaaaggaagg 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 aacttgggccttgacagtatgaaaatgaagacaacaggatatgctccattaaaaggaagg 440

                                                                       
Query: 241 cccaggattaggatagatgaatttgcctgtgagagtccatgccctttcatatgggttgcc 300
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccaggattaggatagatgaattcgcctgtgagagtccatgccctttcatatgggttgcc 500

                   
Query: 301 accccaga 308
           ||||||||
Sbjct: 501 accccaga 508


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 708
Length adjustment: 9
Effective length of query: 299
Effective length of database: 699
Effective search space:   209001
Effective search space used:   209001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)