BAC Information

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BAC

Clone NameMSMg01-499O03
Chromosome13 (Build37)
Map Location 111,047,014 - 111,224,253
singlet/doubletdoublet
Overlap geneRab3c, EG432803, 9830130M13Rik, Plk2
Upstream genePde4d, LOC100040968, LOC100040577
Downstream geneLOC100040614, LOC668159, 4732495G21Rik, LOC100040640, EG621953, Gpbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-499O03.T7 (MSMg01no499_o03.b1)MSMg01-499O03.TJ (MSMg01no499_o03.g1)
ACCAG575859AG575860
length766715
length of high quality
(start - end)
498 (70 - 567)236 (60 - 295)
definitionCHROMAT_FILE: MSMg01no499_o03.b1 PHD_FILE: MSMg01no499_o03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:23 2005CHROMAT_FILE: MSMg01no499_o03.g1 PHD_FILE: MSMg01no499_o03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,223,760 - 111,224,253)(111,047,014 - 111,047,248)
sequence
AAATTGTGGGCGTTAAACGACTCACATAGTCAGGAGTGGCCGGAATCATT
CCCTGCTGCTATCAGGAGCTCTGAACTCTGGCTTGTACTAACCTACCAAC
TAAGTCTTTCTTCCACAAGATAGGTTTTCTGTTTTATCAACATTGATCTC
TCCATCTCTTGAAAACATAGCATCTTCTGGAGGTTGCCCAAATTGTAGAA
GATACCCAACAATTCCTATTGTTAGTACAAATTCATCACGTGTATTATTG
TCTTTCTCGTTTCTAGGAAAAGAAGTTGTTGGAGCAAGATACATGGGAAA
CAGTCCAGAGTCATATTTTTTGAGCTCCCACAATGCCCCTTTTCTGGCAG
AGGCCTGTAGCACCACATGGGCTCCTACATGAGACCACCCCTTACTGGTA
CTCTTCCAGTGCTTATTGCTTTATTGTGACAGTCATCAGGCTTATGTGGC
AGTGTGAGCTTCTGTGGCCATGTCAAACTAAATTCTCCAGCATTTCTTTG
TTATTATTCTCTTTTAATCTGTCCTTAATGTTTCCAGTTGTACTAAATAA
CCCCAGAGAAATCAGGAGCTTGTGGGTAAGTGGAGAATATCACCCTGTTG
CCTCTTAGATCTCATCTCATCAGATCTAAGTATGTGTATTAAACAAAGGA
TATACATGGACGCACTGATACTCCATGACAGTCTCACCATGCTTTTGCTA
AAGGATGCTGTAACTATTGCCACACCCTTTTTCTTTTATAGGCTTGCCTT
TCCAGTTCATCACAAN
GGAGGGACATTCCTTATGTGTGAACNANAGAAGGACCTGCTTTTATCCGA
GAGAAAANCAGACTGGCCCAAGTCCCAAATGCAGATTTAAGGTTCTGCTC
TGGCATGGACTATACTTGCTTAACTTCTCTAGATCTTGTTTCCTAACTAG
GTATCTTTGTTGGAAATTAAATAATGATAGGGATTTGACTGAAGAGACTC
CTCACTTGGTCTTGGCTGGTGCCCTTGTTCATTGTATACTCTCTTCAGCT
CTGGGTAACCACCCTACTATCTGAACACCCCAGGGNATTTTCTATCACTA
CATATGGCCACGGGCTTTTTAGCCTGGCTTGGTATTTATTGTACGCAGTG
GACTGATCCTCAACGGCTCCCAGACTGTGAAACTCCTTCCCCCCTTTGTC
TTGATATGTGTAATATGGTGAGATGATATTTTTTGATGTCTTAGTAAATT
AATTAGACATTTATATAAGTGTCTAAAATAGGCTGTGAAGGGCAGTAAAT
TGTTTTTAAGCCTCCAAGATATGTCTACACATCAGTGTTATATATAGTTC
ACAAATAAATGATTAGTGTTGCTATGCAGCAGTTAACTATATATAAGGGA
GTATTTACCATTTGTGTCTCTGAGCTTTGAGCATGTTTTTTTTGTTTTTT
TTTGTGATGAATATGCACCTTTGAAAGCATAGACTGGGGTTACTCTCTTA
TCATTAACTTTCCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no499_o03.b1 MSMg01no499_o03.b1 CHROMAT_FILE:
MSMg01no499_o03.b1 PHD_FILE: MSMg01no499_o03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:23 2005
         (498 letters)



>mm_chr13_111223560_111224457
          Length = 898

 Score =  870 bits (450), Expect = 0.0
 Identities = 483/494 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgaactctggcttgtactaacctaccaactaagtctttcttccacaagataggttttc 60
           ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 694 tctgagctctggcttgtactaacctaccaactaagtctttcttccacaagatagtttttc 635

                                                                       
Query: 61  tgttttatcaacattgatctctccatctcttgaaaacatagcatcttctggaggttgccc 120
           | ||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||
Sbjct: 634 tcttttatcaacattgatctctccatctcctgaacacatatcatcttctggaggttgccc 575

                                                                       
Query: 121 aaattgtagaagatacccaacaattcctattgttagtacaaattcatcacgtgtattatt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 574 aaattgtagaagatacccaacaattcctattgttagtacaaattcatcacgtgtatcatt 515

                                                                       
Query: 181 gtctttctcgtttctaggaaaagaagttgttggagcaagatacatgggaaacagtccaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gtctttctcgtttctaggaaaagaagttgttggagcaagatacatgggaaacagtccaga 455

                                                                       
Query: 241 gtcatattttttgagctcccacaatgccccttttctggcagaggcctgtagcaccacatg 300
           ||||||  || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 gtcataagttctgagctcccacaatgccccttttctggcagaggcctgtagcaccacatg 395

                                                                       
Query: 301 ggctcctacatgagaccaccccttactggtactcttccagtgcttattgctttattgtga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ggctcctacatgagaccaccccttactggtactcttccagtgcttattgctttattgtga 335

                                                                       
Query: 361 cagtcatcaggcttatgtggcagtgtgagcttctgtggccatgtcaaactaaattctcca 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 334 cagtcatcaggcttatgtggcagtgtgagcttctgtggccatgtcaaactaaattcccca 275

                                                                       
Query: 421 gcatttctttgttattattctcttttaatctgtccttaatgtttccagttgtactaaata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 gcatttctttgttattattctcttttaatctgtccttaatgtttccagttgtactaaata 215

                         
Query: 481 accccagagaaatc 494
           ||||||||||||||
Sbjct: 214 accccagagaaatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space:   433344
Effective search space used:   433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no499_o03.g1 MSMg01no499_o03.g1 CHROMAT_FILE:
MSMg01no499_o03.g1 PHD_FILE: MSMg01no499_o03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:23 2005
         (236 letters)



>mm_chr13_111046814_111047449
          Length = 636

 Score =  433 bits (224), Expect = e-126
 Identities = 232/235 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agactggcccaagtcccaaatgcagatttaaggttctgctctggcatggactatacttgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agactggcccaagtcccaaatgcagatttaaggttctgctctggcatggactatacttgc 260

                                                                       
Query: 61  ttaacttctctagatcttgtttcctaactaggtatctttgttggaaattaaataatgata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaacttctctagatcttgtttcctaactaggtatctttgttggaaattaaataatgata 320

                                                                       
Query: 121 gggatttgactgaagagactcctcacttggtcttggctggtgcccttgttcattgtatac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 321 gggatttgactgaagagactcctcacttggtcttggctggtgcccttgtccaatgtatac 380

                                                                  
Query: 181 tctcttcagctctgggtaaccaccctactatctgaacaccccagggnattttcta 235
           |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 tctcttcagctctgggtaaccaccctactatctgaacaccccagggtattttcta 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)