BAC Information

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BAC

Clone NameMSMg01-500H12
Chromosome13 (Build37)
Map Location 50,222,000 - 50,222,312
singlet/doubletsinglet
Overlap genenone
Upstream geneWnk2, Ninj1, 1110007C09Rik, Susd3, Fgd3, Bicd2, Ippk, Cenpp, Tes3-ps, Ecm2, Aspn, Omd, Ogn, Nol8, Iars, LOC667488, LOC670357, EG638833, Gm272, EG667503, EG667507, LOC100040099, LOC625110, LOC676907, LOC667546, LOC667552, LOC100040085
Downstream geneLOC100040159, LOC100040176, LOC100040118, Gm906, 2310081J21Rik, LOC676954, LOC667625, LOC667632, EG667637, Fbxw17, Gm806, EG639044, Gm904, LOC100040315, EG667693, LOC100040161, LOC100040190, EG667712, LOC676997, EG667717, Spin1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-500H12.T7 (MSMg01no500_h12.b1)MSMg01-500H12.TJ (MSMg01no500_h12.g1)
ACCAG576301AG576302
length664662
length of high quality
(start - end)
310 (298 - 607)310 (295 - 604)
definitionCHROMAT_FILE: MSMg01no500_h12.b1 PHD_FILE: MSMg01no500_h12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:07 2005CHROMAT_FILE: MSMg01no500_h12.g1 PHD_FILE: MSMg01no500_h12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:07 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
AACACGAATTGCAGCAACTGCGNGGNAATCNCATTTTTACCACATAAAAA
GATATCAATTACAGTAAATAGTATATTATAAAATTGATTCTTTTAAATTA
TTACAAATATGGTACTACTTTAAGTTTAGTACTATTAAATGTATCTTTTC
AAAATTTGAAAAAACTTTACCATCAAAGCTTCCCTACTTGTATTAGATAT
TTTTCTAAATGCTTTAAAAATTTTCCACTGAACCAGTATAATTTTTGTGT
TTTTGTTTTTTTTTTCTTATATAAAAATATGAAGTTGGAAGCTTACTAAG
GGAAAATTTTGGGAAAAGTTGGAGGAAGGGAAAATATATAAACAAAATAT
ATTGTATGAAAAACAATATCAACTAACCAGACCCACCAGAGCTCTCACGA
ACTAAACCATCAACCAAAGAGAACACATGGAGGGACCCATGGCTCCAGCC
ACATTTGTAGCAAAGAATGGCCTTTTTGGACATGAGTGGAAGGAGAAGCC
CTTGGTCCTGGGAAGGTTCCATGCCCCAGTGTAGGGGAATACCAGGACAT
CGAGTTGGGAGTAGATAGCTGGGTGGATGAGCACCTTCATAGAAACAGGG
GGAAGAATGATTGTGATAGAGGGTTTCTGGAGGGGAAACCTGGAAAGGGG
ATAACAGTTGACAT
AAAGGATTTTCAAAATAAGGTNGAACTATAGAAGGTTTCGCAAAAAACGA
TATATGCACCTTGCTGAGTTTCTAAAATTGAGGGGTACTTCTATTGAAAG
CAGAGTTGGACTTCATGTATGACCCCAGGCATATAAACAGTTATCAGAAA
ATCCTTGGGACAAAGTGACAGCTCCTGCTGCTTTTGATAGTGTATGCACA
TTAACTCCACTCTTTGTCCTTTACTAAGTATCATGCAGAAAGATATGCTA
ACCTGAAGGGTGCTCCAGTTCCATCCAAGAACAGGAANGATAGTATATTG
CTCCTTCCTGGTTACTATCATTGCATCTTTTGGATCTTTAAATTTATGGT
GTGTTTGTTTGTTTTGTGTGGGAGTGGGGGCTGTGTGTGTGCACCCACCC
TGGTGATAATGATTTCTGGACAGACTTGTCCCTTGAAGTGTGGTTTTGTA
CTTTGTCTTCCTGTTCTTCATCTCCTTCTCATTATCCTCCTCTTCATACT
CCTTTTTCTTCTCCTTTTTTGAGATTTTCCTACATCCTTCTGGGCAGGAA
GGGGCTCGAACAGTTAGAGTGACACTAGCCAAAGATGGCAGTGAGATTTA
GACCTGGTGACATAAGAAGAATGCAAGTAAGGCAAAACAGGATAAAAAAT
TAATAGAAAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no500_h12.g1 MSMg01no500_h12.g1 CHROMAT_FILE:
MSMg01no500_h12.g1 PHD_FILE: MSMg01no500_h12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:07 2005
         (310 letters)



>mm_chr13_50221800_50222509
          Length = 710

 Score =  528 bits (273), Expect = e-154
 Identities = 302/313 (96%), Gaps = 3/313 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atattgctccttcctggttactatcattgcatcttttggatctttaaatttatggtgtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atattgctccttcctggttactatcattgcatcttttggatctttaaatttatggtgtgt 260

                                                                       
Query: 61  ttgtttgttttgtgtgggagtgggggctgtgtgtgtgcacccaccctggtgataatgatt 120
           |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||
Sbjct: 261 ttgtttgttttgtgtgggagtgggggctgtgtgtgtgcagtgaccctggtgataatgatt 320

                                                                       
Query: 121 tctggacagacttgtcccttgaagtgtggttttgtactttgtcttcctgttcttcatctc 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 tctggacagacttgtcccttgaagtgtggttttgtactttgtcctcctgttcttcatctc 380

                                                                       
Query: 181 cttctcattatcctcctcttcatactcctttttcttctcct---tttttgagattttcct 237
           |||||||||||||||||||||||||||||||||||||||||   ||||||||||||| ||
Sbjct: 381 cttctcattatcctcctcttcatactcctttttcttctcctccttttttgagattttact 440

                                                                       
Query: 238 acatccttctgggcaggaaggggctcgaacagttagagtgacactagccaaagatggcag 297
           |||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||
Sbjct: 441 acatccttctgggcaggaaggggctcaaacatttagagtgacattagccaaagatggcag 500

                        
Query: 298 tgagatttagacc 310
           |||||||||||||
Sbjct: 501 tgagatttagacc 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space:   211001
Effective search space used:   211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)