XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTAT
TTATTCCATAAAAGATGTTAGCTGTTGGCAATAGACTAAGATGACACTCT
CTCCTTGCCAAGCCTTTATTTCAGCTAGAGACTGATTTCTGCTACTGGAA
GAAAACTAAAAGCAGAAACCAAATAACTAGCAGCATTGGAGAATGTTGCC
CTCCTACCATGGTTCTTATATTTACATGGTGGTCATAAGAAGGAAAGAAA
AACCCAGTAGAGAAGAAGTCTGAATGTTCAAAATCCTTTCTCTCTGATGT
TGCCGACTTGCTTTTGGGAAAACAGTGACTGCATTTGGCTTTAGATAGTG
ACAGCCATTTTGCCTTATAATCTGATGGTACTAAGCATAGATTTTTGAAC
TCCTGAAAACAGATTGCTTTGCGAGAACAGTGCTGGTTTCTATTCTGTGA
GTTGAAAGCAAATCTATTTAGAGCAATAGTCAGCAGCCCACAATCTTCCC
TGACTTCTGGTGTGTGGTTTATTGATGTTTTAATCAGACAGTTTTGACCA
GAAACAGATCACCCCGGCTAGCATGGTTTTGTGGAATATGCTTTTTATTT
ATACCTCAGAATTAAAAGCGGAAACTCAAGCTTACTTGTATAAAGGTATT
AAAATCGTGGCGATGTGGATGTCTTTGGGAGAATAGTGTGTAATCTGAAG
ATCCGGGTGCCAAATC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTCACCCGAGGAATACCGAAAGGCTGAGAAACACCTGAAAAATG
TTCAACATCCTTAATCATCAGAGAAATGCAAATCAAAACAACCCTGAGAT
TCCATCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGC
AGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCGTTGTTGGTG
GGATTGCAAGCGTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCA
GAAAATTGGACATAGTACTACCGGAGGATCCCTCAATACCTCTCCTGGGC
ATATATCCAGAAGATGTCCCAACCAGTAAGAAGGACACATGCTCCACTAT
GTTCACAGCAGCCTTATTTATAATAGCCAGAAGCTGAAAAGAACCCAGAT
GTCCCTCAACAGAGGAATGGATACAAAAAAATGTGGTACATTTACACAAT
GGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCA
AATGGTTGGACCTGGAGGGCATCATCCTGAGTGAGGTAACCCAATCACAA
AAGAACTCAAATGAAATGTACTCACTGATAAGTGGATATTAACCCAGAAA
CTTAGTATAGCAAGATATAAGGTACAATATGCAAAACATATGAAT

Query= MSMg01no501_a01.b1 MSMg01no501_a01.b1 CHROMAT_FILE:
MSMg01no501_a01.b1 PHD_FILE: MSMg01no501_a01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:45 2005
         (676 letters)



>mm_chr13_47459962_47461037
          Length = 1076

 Score = 1284 bits (664), Expect = 0.0
 Identities = 670/672 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttatttattccataaaagatgttagctgttggcaatagactaagatgacactct 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttatttattcaataaaagatgttagctgttggcaatagactaagatgacactct 264

                                                                       
Query: 65  ctccttgccaagcctttatttcagctagagactgatttctgctactggaagaaaactaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctccttgccaagcctttatttcagctagagactgatttctgctactggaagaaaactaaa 324

                                                                       
Query: 125 agcagaaaccaaataactagcagcattggagaatgttgccctcctaccatggttcttata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agcagaaaccaaataactagcagcattggagaatgttgccctcctaccatggttcttata 384

                                                                       
Query: 185 tttacatggtggtcataagaaggaaagaaaaacccagtagagaagaagtctgaatgttca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttacatggtggtcataagaaggaaagaaaaacccagtagagaagaagtctgaatgttca 444

                                                                       
Query: 245 aaatcctttctctctgatgttgccgacttgcttttgggaaaacagtgactgcatttggct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaatcctttctctctgatgttgccgacttgcttttgggaaaacagtgactgcatttggct 504

                                                                       
Query: 305 ttagatagtgacagccattttgccttataatctgatggtactaagcatagatttttgaac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttagatagtgacagccattttgccttataatctgatggtactaagcatagatttttgaac 564

                                                                       
Query: 365 tcctgaaaacagattgctttgcgagaacagtgctggtttctattctgtgagttgaaagca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcctgaaaacagattgctttgcgagaacagtgctggtttctattctgtgagttgaaagca 624

                                                                       
Query: 425 aatctatttagagcaatagtcagcagcccacaatcttccctgacttctggtgtgtggttt 484
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 625 aatctatttagagcaatagtcagcagcccacagtcttccctgacttctggtgtgtggttt 684

                                                                       
Query: 485 attgatgttttaatcagacagttttgaccagaaacagatcaccccggctagcatggtttt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 attgatgttttaatcagacagttttgaccagaaacagatcaccccggctagcatggtttt 744

                                                                       
Query: 545 gtggaatatgctttttatttatacctcagaattaaaagcggaaactcaagcttacttgta 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gtggaatatgctttttatttatacctcagaattaaaagcggaaactcaagcttacttgta 804

                                                                       
Query: 605 taaaggtattaaaatcgtggcgatgtggatgtctttgggagaatagtgtgtaatctgaag 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 taaaggtattaaaatcgtggcgatgtggatgtctttgggagaatagtgtgtaatctgaag 864

                       
Query: 665 atccgggtgcca 676
           ||||||||||||
Sbjct: 865 atccgggtgcca 876


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space:   709956
Effective search space used:   709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)