BAC Information

Click to search

BAC

Clone NameMSMg01-501B24
Chromosome13 (Build37)
Map Location 65,250,610 - 65,251,149
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp367, Habp4, Cdc14b, 1110018J18Rik, Ctsl, Ccrk, LOC665612, 1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678, LOC631470, Cntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1
Downstream geneOlfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767, LOC665777, EG628648, LOC665809, LOC100042404, LOC628722, LOC665851, Vmn2r-ps99, LOC628794, EG665897, LOC100041855, EG628746, LOC100042434
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-501B24.T7 (MSMg01no501_b24.b1)MSMg01-501B24.TJ (MSMg01no501_b24.g1)
ACCAG576799AG576800
length700730
length of high quality
(start - end)		497 (19 - 515)540 (59 - 598)
definitionCHROMAT_FILE: MSMg01no501_b24.b1 PHD_FILE: MSMg01no501_b24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:54 2005CHROMAT_FILE: MSMg01no501_b24.g1 PHD_FILE: MSMg01no501_b24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GACTCACTATATTCAGAGGATCCGCGGAATTCCAGGTTCTTGCATAACAC
ACCTGGCACTTTTGTTGTGGCAGGAAAGATGTTGATATTATGAAAAAGAG
GACTAGGGAGGCAGGTGAGAGAAAAGAGAGAAGCTAATTTCACATTGCAC
AACAAATCCTTTGCCCTAACTCTGAGTCTAACACTAACCCTGATGTTTCT
TCTTTGTGTAATAGAGATAATATTTACTCAGTGCAACCATCAAGAATAAT
GATGGCCACCTTAACCTTAACCCTGAGCCTAACCCTGAAATTTAACCTAA
ACCTCTAGCCCTATCCTCACCTTCACTCCTTAATGTCCTAACCACCCTAA
CTCTAACAACACTTGTCCCAGTCCTAATCGTAACCCTCTAATCCCCCAAC
CCTAACTCTAACCCTGCTTACTGTGGGGGATATTTCTTAACTATACCTTT
AGAGGTGAGAAACCCTTTCTTAATCTTGATCTTTTGAGATGTTAAGATCT
ACCTTTAACATAGACAACAGATTCTTTTGGCAACCGGTAGTAATTTCATT
TTATCTACTTGCCCTACATATTTTACAAGAAGATTTGTTTGTTTGTTTTT
TTTTTAACTGGCATTACTAAGTCCTTATTTCTTCAGAATTCTGGTTAGTA
CTGAAGATCAGCTGAGATATCTAGCAGCATGGACTCAACTTGAACTTGAT


XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTGAATGGAAGAGAATCACTTAAAGAAATGTTCAACATACTT
AGCTATCAGGGTAATGAAAATCAAAACAACCCTGAGATTCCGCCTTATAC
CAATCAGAATGGCTAAGATAAAAAACTTAGGTGACAGCAGATGCTGATGA
GGATATGAAGAAAGGGCAACACTCCCCCACTGCTGGTGGGGTTGCAAGCT
GATAAACCACTTTGGAAATAATATGTATTTCAATAAAATGTTAGAAAATG
TGAAGGCAAATATCAAACTACATAAAAGTTGTTTGGGTTTTTATTCTAAT
TTCACTCTAAATGACATTAGCTTTTTTATGTTTCAAGTTCTTAATTTTCA
TTTATATAATTTTAAAATTATGGACTTGCAGGAATTTTCATAAAAGCAAC
TATTTTATTGTATGTTACACAAGTTAACATATGACATGTTTTCAGAAATT
ATTAAGTGGTATGGGTATAAGTTGTCCCTATAATAAGTCAGAATGTTTAT
TCCTTTCCTGCTATTTCTTATTTAATTATAACAAAAACACAATCTGAAAT
ACATCACAAAACATAACAGCAATATTTCCCTGCCTTGATGTTTTAGTTAG
TCACAGAAAGCCAGACACCTGACCAGTATTGGGAAGTGATTCATATATGN
TCACACTGTCTTAGATCATAGTTCTGGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no501_b24.g1 MSMg01no501_b24.g1 CHROMAT_FILE:
MSMg01no501_b24.g1 PHD_FILE: MSMg01no501_b24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:54 2005
         (540 letters)



>mm_chr13_65250410_65251349
          Length = 940

 Score = 1044 bits (540), Expect = 0.0
 Identities = 540/540 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgaatggaagagaatcacttaaagaaatgttcaacatacttagctatcagggtaatgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgaatggaagagaatcacttaaagaaatgttcaacatacttagctatcagggtaatgaa 260

                                                                       
Query: 61  aatcaaaacaaccctgagattccgccttataccaatcagaatggctaagataaaaaactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatcaaaacaaccctgagattccgccttataccaatcagaatggctaagataaaaaactt 320

                                                                       
Query: 121 aggtgacagcagatgctgatgaggatatgaagaaagggcaacactcccccactgctggtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggtgacagcagatgctgatgaggatatgaagaaagggcaacactcccccactgctggtg 380

                                                                       
Query: 181 gggttgcaagctgataaaccactttggaaataatatgtatttcaataaaatgttagaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggttgcaagctgataaaccactttggaaataatatgtatttcaataaaatgttagaaaa 440

                                                                       
Query: 241 tgtgaaggcaaatatcaaactacataaaagttgtttgggtttttattctaatttcactct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtgaaggcaaatatcaaactacataaaagttgtttgggtttttattctaatttcactct 500

                                                                       
Query: 301 aaatgacattagcttttttatgtttcaagttcttaattttcatttatataattttaaaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaatgacattagcttttttatgtttcaagttcttaattttcatttatataattttaaaat 560

                                                                       
Query: 361 tatggacttgcaggaattttcataaaagcaactattttattgtatgttacacaagttaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatggacttgcaggaattttcataaaagcaactattttattgtatgttacacaagttaac 620

                                                                       
Query: 421 atatgacatgttttcagaaattattaagtggtatgggtataagttgtccctataataagt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atatgacatgttttcagaaattattaagtggtatgggtataagttgtccctataataagt 680

                                                                       
Query: 481 cagaatgtttattcctttcctgctatttcttatttaattataacaaaaacacaatctgaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagaatgtttattcctttcctgctatttcttatttaattataacaaaaacacaatctgaa 740


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space:   492900
Effective search space used:   492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |