Query= MSMg01no501_c02.b1 MSMg01no501_c02.b1 CHROMAT_FILE:
MSMg01no501_c02.b1 PHD_FILE: MSMg01no501_c02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:55 2005
(624 letters)
>mm_chr13_22970917_22971940
Length = 1024
Score = 967 bits (500), Expect = 0.0
Identities = 583/634 (91%), Gaps = 40/634 (6%)
Strand = Plus / Plus
Query: 7 ggaattcttctagtatccggcttgcttctcatcctgggagcctgtcagggcttgcctgac 66
||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 231 ggaattcttctagtatctggctttcttctcatcctgggagcctgtcagg----------- 279
Query: 67 actggagtggtggttgtctcttgctagctctcagtctgggtcccctggtattaggctggt 126
||| ||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 280 act-------------tctcttgctagctctcagtctgggtcccctggtatcaggctagt 326
Query: 127 tgtggtgtcaggcttgtttctttcaggaaatgttaaagatgtcataggtcagaacactga 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tgtggtgtcaggcttgtttctttcaggaaatgttaaagatgtcataggtcagaacactga 386
Query: 187 gcttagacagcctttctcctctctgccacctactggtgaacaagagccacatccacaatg 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gcttagacagcctttctcctctctgccacctactggtgaacaagagccacatccacaatg 446
Query: 247 cctctaggggcagatataattgaggtttgtagg-----acata---------acacacac 292
||||||||||||||||| ||||||||||||||| ||| | ||||||||
Sbjct: 447 cctctaggggcagatatgattgaggtttgtagggcaaaacacacacacacacacacacac 506
Query: 293 acacacacacacacatatatactctttcattgttctacatgcagccatacaatttgacta 352
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 acacacacacacacacatatactctttcattgttctacatgcagccatacaatttgacta 566
Query: 353 gcatcatttgttaaagatactatcttatctccagtctgtatttttggctgctttctcaga 412
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 567 gcatcatttgttaaagatactatcttatcgccagtctgtatttttggctgctttctcaga 626
Query: 413 aagaaaaaaaaa--tcaaaaaccaaaaatcagttgcctgtaggtgtgtagatttatgtct 470
|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 627 aagaaaaaaaaaaatcaaaaaccaaaaaccagttgcctgtaggtgtgtagatttatgtct 686
Query: 471 gagtcttcagttcaatttcatcgatcaccatatctgtttttacagcaatagcactttcat 530
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 gaatcttcagttcaatttcatcgatcaccatatctgtttttacagcaatagcactttcat 746
Query: 531 tttactactatagctaggcaatacaacttgaaatctggataggtgatatatccttcagtg 590
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 tttattactatagctaggcaatacaacttgaaatctggataggtgatatatccttcagtg 806
Query: 591 tttttatcactcaggattggctttttaaattttt 624
||||||||||||||||||||||||||||||||||
Sbjct: 807 tttttatcactcaggattggctttttaaattttt 840
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space: 622596
Effective search space used: 622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no501_c02.g1 MSMg01no501_c02.g1 CHROMAT_FILE:
MSMg01no501_c02.g1 PHD_FILE: MSMg01no501_c02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:55 2005
(639 letters)
>mm_chr13_23173109_23174147
Length = 1039
Score = 532 bits (275), Expect = e-155
Identities = 290/295 (98%)
Strand = Plus / Minus
Query: 1 ctgtcatcaacatcagtttcaggcctgcaggtgagcacaaatgcacatgtacacaacccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ctgtcatcaacatcagtttcaggcctgcaggtgagcacaaatgcacatgtacacaacccc 436
Query: 61 gtagagaattgggcccacccactcacaacatgtgtatgtacattcaaaacactcaacaat 120
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 435 gtagagaattgggcccacccactcacaagatgtgtatgtatattcaaaacactcaacaat 376
Query: 121 ggaatttctacaaagaaatcataattccattggctcattaaggaagttaagaaacaaact 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ggaatttatacaaagaaatcataattccattggctcattaaggaagttaagaaacaaact 316
Query: 181 gacaaagcaaatggatttatctattgtttggctaaacccaggagagaaagactcctcctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gacaaagcaaatggatttatctattgtttggctaaacccaggagagaaagactcctcctt 256
Query: 241 cctcctcttcttctctgtatcagtgtcataattttataatagaaagaaaatccag 295
||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 255 cctcctcctcttctctgtatcagtgtcaaaattttataatagaaagaaaatccag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space: 647241
Effective search space used: 647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
