Query= MSMg01no501_n16.b1 MSMg01no501_n16.b1 CHROMAT_FILE:
MSMg01no501_n16.b1 PHD_FILE: MSMg01no501_n16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:45 2005
(665 letters)
>mm_chr13_15955718_15956782
Length = 1065
Score = 978 bits (506), Expect = 0.0
Identities = 538/556 (96%), Gaps = 12/556 (2%)
Strand = Plus / Minus
Query: 5 gaccctgttctctacctaatagctcttctagataccaagaacaccttacagaggcgacaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 gaccctgttctctacctaatagctcttctagataccaagaacaccttacagaggcgacaa 485
Query: 65 ccaaaaatatctctctaaaatttgggcctaaactctcacctatttcttagaggcaatctc 124
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 484 ccaaaaatatctctctaaaatttgggcctaaactctcacctatttctcagaggcaatctc 425
Query: 125 atgcctagttgtttgtcaagggaaaaactgtggccaaagaatgtggtaacacagagaatg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 atgcctagttgtttgtcaagggaaaaactgtggccaaagaatgtggtaacacagagaatg 365
Query: 185 cagtccttattctatctagaggagttatggatgtctttattaagttttgaaatacatttg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 cagtccttattctatctagaggagttatggatgtctttattaagttttgaaatacatttg 305
Query: 245 ttcatagagtgaacaccttacagcataatattgtgaaaaaagaagaaagtaatgaaagag 304
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 304 ttcatagagtgaacaccttacagcataataaggggaaaaaagaagaaagtaatgaaagag 245
Query: 305 gatataaagccaattgttgcttctctgaatcagaatttgtcacggactttgtttttgttt 364
|||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 244 gatataaaaccaattgttgcttctctgaatcagaa------------tttgtttttgttt 197
Query: 365 tgaaaatggataaatgcataaaatatattgaattctgaaagcattaagtttaatgtgaag 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 tgaaaatggataaatgcataaaatatattgaattctgaaagcattaagtttaatgtgaag 137
Query: 425 tgccagagcttccttccattcgaaatgcctcttgcctacgtgtatagaagttcaaagtgc 484
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 136 tgccagagcttccttccattcgaaacgcctcttgcctacgtgtatagaagttcaaagtgc 77
Query: 485 atatactttgggtctgattaatttttgtgtattgtgtttctttgtttgcaatttgataca 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76 atatactttgggtctgattaatttttgtgtattgtgtttctttgtttgcaatttgataca 17
Query: 545 taataaagtttgtaca 560
||||||||||||||||
Sbjct: 16 taataaagtttgtaca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space: 691025
Effective search space used: 691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no501_n16.g1 MSMg01no501_n16.g1 CHROMAT_FILE:
MSMg01no501_n16.g1 PHD_FILE: MSMg01no501_n16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:45 2005
(655 letters)
>mm_chr13_15898682_15899736
Length = 1055
Score = 1181 bits (611), Expect = 0.0
Identities = 644/655 (98%)
Strand = Plus / Plus
Query: 1 atactcaggcggtgacaacacattgagcaagactccagcctgatatttattctacagttt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct: 201 atactcaggcggtgacaacacattgagcaagactccagcctgatatttattcgacagcct 260
Query: 61 tctttaaatcatgaagccttgagaaaaaggcaagactttgtatggtcagctttgagaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctttaaatcatgaagccttgagaaaaaggcaagactttgtatggtcagctttgagaaag 320
Query: 121 atcacaaacacctgagtcacacagtaaggtcaggtctgactgtacttgctcagtcatcac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcacaaacacctgagtcacacagtaaggtcaggtctgactgtacttgctcagtcatcac 380
Query: 181 tggccagttgagtcaaatctgagaagacagcagaggatgtcggacccacagatgcacata 240
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 tggccagttgagtcagatctgagaagacagcagaggatgtcggacccacagacgcacata 440
Query: 241 ctggcttgttattctttaccctctcttgtcttggtgactccctatggaatgctgtgggaa 300
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctggcatggtattctttaccctctcttgtcttggtgactccctatggaatgctgtgggaa 500
Query: 301 gaactcagttccccaaattccactgacctcagcagcaaagatgtttgaattgattctagt 360
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 501 gaactcagttccccaagttccactgacctcagcggcaaagatgtttgaattgattctagt 560
Query: 361 taaaaaccataattgaggatggcacagatcctgtagtaatggtaattgtaaatttcattt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaaaaccataattgaggatggcacagatcctgtagtaatggtaattgtaaatttcattt 620
Query: 421 gctttccttcaggtttttctaagggaaattgtcttggaatattggaggatcatcttgctt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gctttccttcaggtttttctaagggaaattgtcttggaatattggaggatcatcttgctt 680
Query: 481 tccatgtttatcatttattagctttgaatagaatttatcaatcacttctgtattataggt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tccatgtttatcatttattagctttgaatagaatttatcaatcacttctgtattataggt 740
Query: 541 aataatatatagtttttctttgtaaagaaaaccagtgtgaaagtaataaaaggttctgtt 600
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aataatatgtagttttcctttgtaaagaaaaccagtgtgaaagtaataaaaggttctgtt 800
Query: 601 tgaacagtactcattcaattaaaagttataggcatgcatttttgctctttctgtt 655
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgaacagtactcattcaattaaaagttataggcatgcatttttgctctttctgtt 855
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space: 674025
Effective search space used: 674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
