BAC Information

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BAC

Clone NameMSMg01-502I24
Chromosome13 (Build37)
Map Location 47,878,391 - 47,878,864
singlet/doubletsinglet
Overlap genenone
Upstream geneKif13a, LOC544928, Nhlrc1, Tpmt, Aof1, Dek, LOC100039761, Ibrdc2
Downstream gene4931429P17Rik, Id4, LOC667351, Zfp169, A830005F24Rik, AW456874, Barx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502I24.T7 (MSMg01no502_i24.b1)MSMg01-502I24.TJ (MSMg01no502_i24.g1)
ACCAG577887AG577888
length762809
length of high quality
(start - end)		478 (36 - 513)43 (57 - 99)
definitionCHROMAT_FILE: MSMg01no502_i24.b1 PHD_FILE: MSMg01no502_i24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:38 2005CHROMAT_FILE: MSMg01no502_i24.g1 PHD_FILE: MSMg01no502_i24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTATGG
GATTTTTTAAAAGAAATCTTTAGTTAATCTCTAAGAGTGATTGGAATTAA
TACATTAATTTAAAAATTAGATGATAGTGATGATATAATAATCTTGGTGG
TTACTGTTAATTTTCATGTAGAATCATGTAAGATCAATCCATGATATGAG
TCTTCTGTGATACTGTAAAGGAACCAACTTCCTCAGAGAGCTATGATACT
CCTAAATTGGTAGGTAAATTTCTGTTTTTACAGATGTTGAATGTATTTAC
ATTTTGATTGTTGAGCTAGAAATCCATTTGGTAGAATGTGAACAGGTGTC
TTTGAAGAGATATCACAGTGGGAAGTGTTCATGGGGTTTCCACAGCTAGT
TGCAACCCAACAGCACATACTTCATAACATTTCAGCTAAATTACCTGATC
CATTTTTGTGTTATGTGGGGGTGGGAAAGCCAACCTTTTTAAGCTCTGGG
AGATTAATCAGAACTTGTTTCAGCCTTCAATTTATGAAAGGAAGAAAAGT
CTCAACTAAGAACTCCCACCTTGGCAGAATTTATAGAAGAAAGCAAGCAA
TAAAGAAACTTGTGGAACGGTGAAAAAAATCAATGTGAAAGGCACAAATA
AGAATATTAGGTATGTAGGTTTGAAATGCATTTCCTGTGCGTGATGGATG
CCCCTTTTTCCAATAATATTGATAGCTTTTACTACTCAACACAATTTTTG
AAATAACAAAAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTGAAGTTCCTTTCTTCTATGAAAGTGAAGGATATTGAGAGACTG
TGGCTAGCCTTTGGTTCTTGTGTGTGTGTGTGTCTGTGTCTGTGTGTGTG
TCGTCCCGCCAGCCCCCTCACCCTCCCCCTTATCCACCTCCCCCCCCCCC
CCCCTCCCTCCTATACTTCACACACATTCCCCCTCTCTATCTCCCCCCCA
ACCCCAACCCCCCCCCACCCCCCCCCCCTCCCCCTTCCTCCTCAAACCCC
CCCCCCTTCTTTCCTCCCACCACTCCCCCCCCTACCCTTACCCCCCCCCC
CCCTCCTCCCCCCCCCCCCCTCCACCCACCTCCCACACACCCCAACCCCC
CCCTTCCCCCCCCCTCCCCCCTAATACCCCACCCCCCCAACCCCCCCCCC
CCTACCCCCCTCAACCCCCCCACCCTCCCCCCCCCCACCCCCACCCTTCC
CCCTCCCCCCCATCACCCCACCCTCCTTCCCCCCCTCCCCCCTCCCCCCA
CCCACCCCACCTCTCCCCCCCCCCCCCCACCCATTCCCCTCCCCCCCCCA
TCCCCCCTCCCTCCCCTTCCTCCCCCTCCCCCCCACATCCCCCCATATCC
ACCCCCTTCTCCCCACTTTCAACCCCCAATCCACCCCCCCCACCTACCCC
CTATCTCATAACCTCCCCCACCCCTACCACATTCCCCCCCATCTCACCCC
ACCCCCTCACACCCTCTATATTAAACCCCTCTCACCTCCTCCCCCCCCCC
CAATCCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_i24.b1 MSMg01no502_i24.b1 CHROMAT_FILE:
MSMg01no502_i24.b1 PHD_FILE: MSMg01no502_i24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:38 2005
         (478 letters)



>mm_chr13_47878187_47879064
          Length = 878

 Score =  917 bits (474), Expect = 0.0
 Identities = 474/474 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctatgggattttttaaaagaaatctttagttaatctctaagagtgattggaatta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gaattctatgggattttttaaaagaaatctttagttaatctctaagagtgattggaatta 619

                                                                       
Query: 65  atacattaatttaaaaattagatgatagtgatgatataataatcttggtggttactgtta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 atacattaatttaaaaattagatgatagtgatgatataataatcttggtggttactgtta 559

                                                                       
Query: 125 attttcatgtagaatcatgtaagatcaatccatgatatgagtcttctgtgatactgtaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 attttcatgtagaatcatgtaagatcaatccatgatatgagtcttctgtgatactgtaaa 499

                                                                       
Query: 185 ggaaccaacttcctcagagagctatgatactcctaaattggtaggtaaatttctgttttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ggaaccaacttcctcagagagctatgatactcctaaattggtaggtaaatttctgttttt 439

                                                                       
Query: 245 acagatgttgaatgtatttacattttgattgttgagctagaaatccatttggtagaatgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 acagatgttgaatgtatttacattttgattgttgagctagaaatccatttggtagaatgt 379

                                                                       
Query: 305 gaacaggtgtctttgaagagatatcacagtgggaagtgttcatggggtttccacagctag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gaacaggtgtctttgaagagatatcacagtgggaagtgttcatggggtttccacagctag 319

                                                                       
Query: 365 ttgcaacccaacagcacatacttcataacatttcagctaaattacctgatccatttttgt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ttgcaacccaacagcacatacttcataacatttcagctaaattacctgatccatttttgt 259

                                                                 
Query: 425 gttatgtgggggtgggaaagccaacctttttaagctctgggagattaatcagaa 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gttatgtgggggtgggaaagccaacctttttaagctctgggagattaatcagaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space:   406224
Effective search space used:   406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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