Query= MSMg01no503_g01.b1 MSMg01no503_g01.b1 CHROMAT_FILE:
MSMg01no503_g01.b1 PHD_FILE: MSMg01no503_g01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:38 2005
(527 letters)
>mm_chr13_20670373_20671299
Length = 927
Score = 1011 bits (523), Expect = 0.0
Identities = 526/527 (99%)
Strand = Plus / Minus
Query: 1 aagcaatcattaaatgaatgacagacataaaagactgacactcgaagactgccacaaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 aagcaatcattaaatgaatgacagacataaaagactgacactcgaagactgccacaaaga 668
Query: 61 tgttccgtcaattcatggtggcagttagagagaaagaccacataaatgatgtgtccaggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 tgttccgtcaattcatggtggcagttagagagaaagaccacataaatgatgtgtccaggc 608
Query: 121 ctgggaagtagggacaaagacaatctaggataagaggagggaatttctcttgcttacata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 ctgggaagtagggacaaagacaatctaggataagaggagggaatttctcttgcttacata 548
Query: 181 atgcattcttaattatcgcttgccagaaaagaccacatacttcaaaaagatgcatggaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 atgcattcttaattatcgcttgccagaaaagaccacatacttcaaaaagatgcatggaag 488
Query: 241 cttacttacagaaatacaagaggctacctgcatctctggcctgtctatctgctttgtaac 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 cttacttacagaaacacaagaggctacctgcatctctggcctgtctatctgctttgtaac 428
Query: 301 taaacagaactttttccttgaagaggtttaaattaccttgtgttacagaaccatcaccct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 taaacagaactttttccttgaagaggtttaaattaccttgtgttacagaaccatcaccct 368
Query: 361 tccctggttttcttcctatctttagctagttcttctcttattctctatccaagttcccct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tccctggttttcttcctatctttagctagttcttctcttattctctatccaagttcccct 308
Query: 421 tactgtccactactagaatggccaagagcaaaagggactaggcatgactgatggaagcaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 tactgtccactactagaatggccaagagcaaaagggactaggcatgactgatggaagcaa 248
Query: 481 tgcattcctctctttctcagcaatttagaagttttggatggattaca 527
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tgcattcctctctttctcagcaatttagaagttttggatggattaca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space: 474089
Effective search space used: 474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no503_g01.g1 MSMg01no503_g01.g1 CHROMAT_FILE:
MSMg01no503_g01.g1 PHD_FILE: MSMg01no503_g01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:38 2005
(535 letters)
>mm_chr13_20536426_20537361
Length = 936
Score = 973 bits (503), Expect = 0.0
Identities = 530/543 (97%), Gaps = 8/543 (1%)
Strand = Plus / Plus
Query: 1 cagaggaaaagtttgcctatggtgtctccacagtggcaccaagagctctttctaatcatc 60
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 cagaggaaaagtttggctatggtgtcttcacagtggcaccaagagctctttctaatcatc 260
Query: 61 taggatacagccctcatttt-aggctaataaacgagttgtagaagctcagtcgtagtctt 119
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taggatacagccctcatttttaggctaataaacgagttgtagaagctcagtcgtagtctt 320
Query: 120 acattccagacacaaaagaattaaataggaaaggaagaacaaaggagaataagctagtag 179
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acattccagacataaaagaattaaataggaaaggaagaacaaaggagaataagctagtag 380
Query: 180 agcctccctcttctcttcctttcctggaaagttgactaagaaatggctccttttttgtta 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcctccctcttctcttcctttcctggaaagttgactaagaaatggctccttttttgtta 440
Query: 240 ttggtcaggacttgttcatgtgacttctcttagttaaaagagagcctagatattgcattt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttggtcaggacttgttcatgtgacttctcttagttaaaagagagcctagatattgcattt 500
Query: 300 tgcagctgctttcattgtcaacaagatcaaaattgggtttctgttgacatggacctgaag 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgcagctgctttcattgtcaacaagatcaaaattgggtttctgttgacatggacctgaag 560
Query: 360 ttttgaatttcttgaattacatcaatcatgtgaattcatccagagggaccttcactagtg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttttgaatttcttgaattacatcaatcatgtgaattcatccagagggaccttcactagtg 620
Query: 420 accaactacctgggggtaacttggtatttggtagtcagtgagtggagctttatacaacaa 479
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 621 accaactacctgggggtaacttggtatttggtagccagtgagtggagctttatacaacaa 680
Query: 480 aagcttggagcaaggttgcgaatttttttttttttttttttt-------actcaggagag 532
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 681 aagcttggagcaaggttgtgaatttttttttttttttttttttttttttactcaggagag 740
Query: 533 ctg 535
|||
Sbjct: 741 ctg 743
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 936
Length adjustment: 10
Effective length of query: 525
Effective length of database: 926
Effective search space: 486150
Effective search space used: 486150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
